RNA–Protein interactions for RNA: ENST00000559550.1

CASC4-210, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-210ENST00000559550 SMIM24O75264 130 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 S100GP29377 79 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 TFAMQ00059 246 aaKnown RBP-0.86□□□□□ -2.55
CASC4-210ENST00000559550 CLLU1Q5K131 121 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 ATP11AUNQ6ZP68 121 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 CENPHQ9H3R5 247 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 PRRC2CQ9Y520 2896 aaKnown RBP-0.86□□□□□ -2.55
CASC4-210ENST00000559550 AKAP11Q9UKA4 1901 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 GOLGA3Q08378 1498 aa-0.86□□□□□ -2.55
CASC4-210ENST00000559550 PBRM1Q86U86 1689 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 G3V318 75 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 DEGS1O15121 323 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 RBP4P02753 201 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 PRM1P04553 51 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 SPCS2Q15005 226 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 PRO0255Q9UI72 69 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 LSM2Q9Y333 95 aaKnown RBP-0.87□□□□□ -2.55
CASC4-210ENST00000559550 ARAP1Q96P48 1450 aa-0.87□□□□□ -2.55
CASC4-210ENST00000559550 DNAH3Q8TD57 4116 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 DSPP15924 2871 aaKnown RBP-0.88□□□□□ -2.55
CASC4-210ENST00000559550 BIVM-ERCC5R4GMW8 1640 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 DNAH2Q9P225 4427 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 PKHD1P08F94 4074 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 TRAV36DV7A0A075B6V5 113 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 BORCS7-ASMTA0A0B4J1R7 106 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 J3QLW9 94 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 TNFSF15O95150 251 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 WFDC2Q14508 124 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 DEFB109BQ30KR1 87 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 BATF3Q9NR55 127 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 V9GYQ6 96 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 WNK1Q9H4A3 2382 aa-0.88□□□□□ -2.55
CASC4-210ENST00000559550 FASNP49327 2511 aaKnown RBP-0.88□□□□□ -2.55
CASC4-210ENST00000559550 NHSL1Q5SYE7 1610 aa-0.89□□□□□ -2.55
CASC4-210ENST00000559550 TNRC18O15417 2968 aaPredicted RBP-0.89□□□□□ -2.55
CASC4-210ENST00000559550 XIRP1Q702N8 1843 aaKnown RBP-0.89□□□□□ -2.55
CASC4-210ENST00000559550 PHIPQ8WWQ0 1821 aa-0.89□□□□□ -2.55
CASC4-210ENST00000559550 CCDC179H3BU77 68 aa-0.89□□□□□ -2.55
CASC4-210ENST00000559550 M0R3E3 92 aa-0.89□□□□□ -2.55
CASC4-210ENST00000559550 DNAH6Q9C0G6 4158 aa-0.89□□□□□ -2.55
CASC4-210ENST00000559550 SPTBN1Q01082 2364 aaKnown RBP-0.9□□□□□ -2.55
CASC4-210ENST00000559550 M0R2P5 195 aa-0.9□□□□□ -2.55
CASC4-210ENST00000559550 DDA1Q9BW61 102 aa-0.9□□□□□ -2.55
CASC4-210ENST00000559550 CNFNQ9BYD5 112 aa-0.9□□□□□ -2.55
CASC4-210ENST00000559550 HIGD1AQ9Y241 93 aa-0.9□□□□□ -2.55
CASC4-210ENST00000559550 PLECQ15149 4684 aaKnown RBP-0.9□□□□□ -2.55
CASC4-210ENST00000559550 FAT3Q8TDW7 4589 aa-0.91□□□□□ -2.55
CASC4-210ENST00000559550 A0A1B0GX51 115 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 SCTP09683 121 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 CMPK1P30085 196 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 RBM3P98179 157 aaKnown RBP-0.91□□□□□ -2.56
CASC4-210ENST00000559550 LINC01545Q5VT33 79 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 TCTE3Q8IZS6 198 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 SKA2Q8WVK7 121 aaPredicted RBP-0.91□□□□□ -2.56
CASC4-210ENST00000559550 ABCA13Q86UQ4 5058 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 COL12A1Q99715 3063 aa-0.91□□□□□ -2.56
CASC4-210ENST00000559550 ERCC6Q03468 1493 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 YPEL1O60688 119 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 EDDM3BP56851 147 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 NDUFA12Q9UI09 145 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 SCP2D1Q9UJQ7 156 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 GVINP1Q7Z2Y8 2422 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 MYO18BQ8IUG5 2567 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 PLCE1Q9P212 2302 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 PKHD1L1Q86WI1 4243 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 NRXN2Q9P2S2 1712 aa-0.92□□□□□ -2.56
CASC4-210ENST00000559550 ZMYM4Q5VZL5 1548 aa-0.93□□□□□ -2.56
CASC4-210ENST00000559550 A0A0D9SFI3 127 aa-0.93□□□□□ -2.56
CASC4-210ENST00000559550 CHD8Q9HCK8 2581 aa-0.93□□□□□ -2.56
CASC4-210ENST00000559550 WDR87Q6ZQQ6 2873 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 SPTBN4Q9H254 2564 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 IBTKQ9P2D0 1353 aaPredicted RBP-0.94□□□□□ -2.56
CASC4-210ENST00000559550 VPS13DQ5THJ4 4388 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 TRAV1-2A0A0B4J238 106 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 TRBV10-3A0A0K0K1G6 114 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 CLPSL1A2RUU4 121 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 SPINK8P0C7L1 97 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 SPAG11BQ08648 103 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 Q5VSD8 79 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 MAGOHBQ96A72 148 aaKnown RBP-0.94□□□□□ -2.56
CASC4-210ENST00000559550 WFDC6Q9BQY6 131 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 GINS2Q9Y248 185 aa-0.94□□□□□ -2.56
CASC4-210ENST00000559550 USP9XQ93008 2570 aaPredicted RBP-0.95□□□□□ -2.56
CASC4-210ENST00000559550 SYNJ1O43426 1573 aa-0.95□□□□□ -2.56
CASC4-210ENST00000559550 TSTD3H0UI37 97 aa-0.95□□□□□ -2.56
CASC4-210ENST00000559550 C10orf82Q8WW14 230 aa-0.95□□□□□ -2.56
CASC4-210ENST00000559550 CNOT1A5YKK6 2376 aaKnown RBP-0.95□□□□□ -2.56
CASC4-210ENST00000559550 ATRQ13535 2644 aa-0.95□□□□□ -2.56
CASC4-210ENST00000559550 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.95□□□□□ -2.56
CASC4-210ENST00000559550 MYH9P35579 1960 aaKnown RBP-0.96□□□□□ -2.56
CASC4-210ENST00000559550 CELSR3Q9NYQ7 3312 aa-0.96□□□□□ -2.56
CASC4-210ENST00000559550 PPRC1Q5VV67 1664 aaKnown RBP-0.96□□□□□ -2.56
CASC4-210ENST00000559550 SMIM15Q7Z3B0 74 aa-0.96□□□□□ -2.56
CASC4-210ENST00000559550 HSPB11Q9Y547 144 aa-0.96□□□□□ -2.56
CASC4-210ENST00000559550 MUC22E2RYF6 1773 aaPredicted RBP-0.96□□□□□ -2.56
CASC4-210ENST00000559550 ANK3Q12955 4377 aaKnown RBP-0.96□□□□□ -2.56
CASC4-210ENST00000559550 AKAP13Q12802 2813 aa-0.97□□□□□ -2.56
CASC4-210ENST00000559550 TRBV20-1A0A075B6N2 111 aa-0.97□□□□□ -2.56
CASC4-210ENST00000559550 SPRR1AP35321 89 aa-0.97□□□□□ -2.56
CASC4-210ENST00000559550 MIC13Q5XKP0 118 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms