RNA–Protein interactions for RNA: ENST00000559550.1

CASC4-210, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-210ENST00000559550 AEBP2Q6ZN18 517 aaPredicted RBP24.13■■□□□ 1.45
CASC4-210ENST00000559550 CHIC1Q5VXU3 224 aa22.42■■□□□ 1.18
CASC4-210ENST00000559550 SENP3Q9H4L4 574 aaPredicted RBP20.55■□□□□ 0.88
CASC4-210ENST00000559550 PHF23Q9BUL5 403 aaPredicted RBP20.25■□□□□ 0.83
CASC4-210ENST00000559550 POTEDQ86YR6 584 aa19.85■□□□□ 0.77
CASC4-210ENST00000559550 FOXD1Q16676 465 aa19.27■□□□□ 0.68
CASC4-210ENST00000559550 MSH5O43196 834 aa18.14■□□□□ 0.49
CASC4-210ENST00000559550 PIAS4Q8N2W9 510 aaPredicted RBP17.83■□□□□ 0.44
CASC4-210ENST00000559550 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
CASC4-210ENST00000559550 PLPPR3Q6T4P5 718 aa17.64■□□□□ 0.41
CASC4-210ENST00000559550 ADRA2BP18089 450 aa17.56■□□□□ 0.4
CASC4-210ENST00000559550 MAPK8IP2Q13387 824 aaPredicted RBP16.29■□□□□ 0.2
CASC4-210ENST00000559550 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
CASC4-210ENST00000559550 CACNB1Q02641 598 aaPredicted RBP16.21■□□□□ 0.19
CASC4-210ENST00000559550 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.15
CASC4-210ENST00000559550 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
CASC4-210ENST00000559550 DCAF8L1A6NGE4 600 aa15.49■□□□□ 0.07
CASC4-210ENST00000559550 RNF39Q9H2S5 420 aa15.49■□□□□ 0.07
CASC4-210ENST00000559550 PPP4R3CPQ6ZMV5 832 aa15.43■□□□□ 0.06
CASC4-210ENST00000559550 POTEHQ6S545 545 aa15.27■□□□□ 0.04
CASC4-210ENST00000559550 CNKSR2Q8WXI2 1034 aa15.24■□□□□ 0.03
CASC4-210ENST00000559550 RNF216Q9NWF9 866 aaPredicted RBP15.23■□□□□ 0.03
CASC4-210ENST00000559550 C1QBPQ07021 282 aaKnown RBP15.2■□□□□ 0.02
CASC4-210ENST00000559550 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
CASC4-210ENST00000559550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.66□□□□□ -0.06
CASC4-210ENST00000559550 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
CASC4-210ENST00000559550 NPM3O75607 178 aaKnown RBP14.5□□□□□ -0.09
CASC4-210ENST00000559550 U3KPZ7 1027 aaPredicted RBP14.39□□□□□ -0.11
CASC4-210ENST00000559550 DSG3P32926 999 aa14.35□□□□□ -0.11
CASC4-210ENST00000559550 SPINK5Q9NQ38 1064 aaPredicted RBP14.32□□□□□ -0.12
CASC4-210ENST00000559550 CAPN15O75808 1086 aa14.23□□□□□ -0.13
CASC4-210ENST00000559550 SLC4A2P04920 1241 aa14.01□□□□□ -0.17
CASC4-210ENST00000559550 ABCB7O75027 752 aa13.9□□□□□ -0.18
CASC4-210ENST00000559550 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
CASC4-210ENST00000559550 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
CASC4-210ENST00000559550 KCNA4P22459 653 aa13.81□□□□□ -0.2
CASC4-210ENST00000559550 APLP2Q06481 763 aa13.81□□□□□ -0.2
CASC4-210ENST00000559550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.71□□□□□ -0.21
CASC4-210ENST00000559550 HNRNPUL2Q1KMD3 747 aaKnown RBP13.71□□□□□ -0.21
CASC4-210ENST00000559550 SP7Q8TDD2 431 aaPredicted RBP13.69□□□□□ -0.22
CASC4-210ENST00000559550 SAMD1Q6SPF0 538 aaPredicted RBP13.64□□□□□ -0.23
CASC4-210ENST00000559550 RBM42Q9BTD8 480 aaKnown RBP13.62□□□□□ -0.23
CASC4-210ENST00000559550 CHRDL2Q6WN34 429 aa13.54□□□□□ -0.24
CASC4-210ENST00000559550 POLA2Q14181 598 aa13.46□□□□□ -0.25
CASC4-210ENST00000559550 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
CASC4-210ENST00000559550 AKT1S1Q96B36 256 aa13.25□□□□□ -0.29
CASC4-210ENST00000559550 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
CASC4-210ENST00000559550 PIP4P2Q8N4L2 257 aa13.16□□□□□ -0.3
CASC4-210ENST00000559550 REM2Q8IYK8 340 aaPredicted RBP13.14□□□□□ -0.31
CASC4-210ENST00000559550 ZBTB12Q9Y330 459 aaPredicted RBP13.09□□□□□ -0.31
CASC4-210ENST00000559550 PLSCR2Q9NRY7 297 aa13.07□□□□□ -0.32
CASC4-210ENST00000559550 OSCARQ8IYS5 282 aa13.05□□□□□ -0.32
CASC4-210ENST00000559550 PITPNM1O00562 1244 aa13.02□□□□□ -0.33
CASC4-210ENST00000559550 FXR2P51116 673 aaKnown RBP eCLIP13.02□□□□□ -0.33
CASC4-210ENST00000559550 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
CASC4-210ENST00000559550 HAX1O00165 279 aa12.97□□□□□ -0.33
CASC4-210ENST00000559550 EVX2Q03828 476 aa12.9□□□□□ -0.34
CASC4-210ENST00000559550 SLC4A1APQ9BWU0 796 aaKnown RBP12.88□□□□□ -0.35
CASC4-210ENST00000559550 LHX8Q68G74 356 aa12.8□□□□□ -0.36
CASC4-210ENST00000559550 ZBTB22O15209 634 aa12.73□□□□□ -0.37
CASC4-210ENST00000559550 SPDYE2BA6NHP3 402 aa12.7□□□□□ -0.38
CASC4-210ENST00000559550 SPDYE6P0CI01 402 aa12.7□□□□□ -0.38
CASC4-210ENST00000559550 SPDYE2Q495Y8 402 aa12.7□□□□□ -0.38
CASC4-210ENST00000559550 ATXN8OSP0DMR3 200 aa12.65□□□□□ -0.38
CASC4-210ENST00000559550 PRKAR2AP13861 404 aaKnown RBP12.64□□□□□ -0.39
CASC4-210ENST00000559550 C19orf67A6NJJ6 358 aa12.62□□□□□ -0.39
CASC4-210ENST00000559550 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
CASC4-210ENST00000559550 FBLN2P98095 1184 aa12.56□□□□□ -0.4
CASC4-210ENST00000559550 MKRN4PQ13434 485 aaPredicted RBP12.56□□□□□ -0.4
CASC4-210ENST00000559550 CLEC11AQ9Y240 323 aa12.55□□□□□ -0.4
CASC4-210ENST00000559550 GABBR2O75899 941 aa12.53□□□□□ -0.4
CASC4-210ENST00000559550 SSUH2Q9Y2M2 353 aa12.53□□□□□ -0.4
CASC4-210ENST00000559550 ZNF692Q9BU19 519 aaPredicted RBP12.44□□□□□ -0.42
CASC4-210ENST00000559550 CHADLQ6NUI6 762 aa12.42□□□□□ -0.42
CASC4-210ENST00000559550 POTEIP0CG38 1075 aa12.32□□□□□ -0.44
CASC4-210ENST00000559550 PRR29P0C7W0 189 aa12.28□□□□□ -0.44
CASC4-210ENST00000559550 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
CASC4-210ENST00000559550 CD44P16070 742 aaKnown RBP12.2□□□□□ -0.46
CASC4-210ENST00000559550 FARP1Q9Y4F1 1045 aaPredicted RBP12.18□□□□□ -0.46
CASC4-210ENST00000559550 POTEMA6NI47 508 aa12.14□□□□□ -0.47
CASC4-210ENST00000559550 CLCN6P51797 869 aa12.12□□□□□ -0.47
CASC4-210ENST00000559550 POTEGQ6S5H5 508 aa12.06□□□□□ -0.48
CASC4-210ENST00000559550 ZNF579Q8NAF0 562 aaKnown RBP12.03□□□□□ -0.48
CASC4-210ENST00000559550 DCBLD2Q96PD2 775 aa12.01□□□□□ -0.49
CASC4-210ENST00000559550 CREBZFQ9NS37 354 aa11.95□□□□□ -0.5
CASC4-210ENST00000559550 PCDH10Q9P2E7 1040 aa11.95□□□□□ -0.5
CASC4-210ENST00000559550 ZRANB1Q9UGI0 708 aa11.95□□□□□ -0.5
CASC4-210ENST00000559550 GALR2O43603 387 aaPredicted RBP11.93□□□□□ -0.5
CASC4-210ENST00000559550 OTUD5Q96G74 571 aa11.93□□□□□ -0.5
CASC4-210ENST00000559550 POTEB2H3BUK9 544 aa11.91□□□□□ -0.5
CASC4-210ENST00000559550 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
CASC4-210ENST00000559550 PHF12Q96QT6 1004 aa11.78□□□□□ -0.52
CASC4-210ENST00000559550 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.53
CASC4-210ENST00000559550 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
CASC4-210ENST00000559550 EHMT2Q96KQ7 1210 aa11.72□□□□□ -0.53
CASC4-210ENST00000559550 CSRNP3Q8WYN3 585 aa11.7□□□□□ -0.54
CASC4-210ENST00000559550 PAK3O75914 559 aaPredicted RBP11.68□□□□□ -0.54
CASC4-210ENST00000559550 POTEJP0CG39 1038 aa11.67□□□□□ -0.54
CASC4-210ENST00000559550 ASTLQ6HA08 431 aaPredicted RBP11.65□□□□□ -0.54
CASC4-210ENST00000559550 SPDYE4A6NLX3 237 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms