RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 LINC01561Q8N1V8 128 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 GTSF1Q8WW33 167 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 TENM3Q9P273 2699 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 C12orf77C9JDV5 145 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 P0DMU3 169 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 FAM231AP0DMU4 169 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 FAM231CP0DMU5 169 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 CGB7P0DN87 165 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 ERHP84090 104 aaKnown RBP3.99□□□□□ -1.77
USP54-216ENST00000498143 ZNF141Q15928 474 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 C19orf54Q5BKX5 351 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 MIC13Q5XKP0 118 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 FAM104BQ5XKR9 115 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 SLC25A47Q6Q0C1 308 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 SCXQ7RTU7 201 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 ZNF329Q86UD4 541 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 TRAV12-3A0A0B4J271 114 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 C9JCJ5 164 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 PGLYRP1O75594 196 aaPredicted RBP3.99□□□□□ -1.77
USP54-216ENST00000498143 BLCAPP62952 87 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 SPINK9Q5DT21 86 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 C5orf38Q86SI9 138 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 RPP25LQ8N5L8 163 aaKnown RBP3.99□□□□□ -1.77
USP54-216ENST00000498143 PRO1854Q9UHT4 67 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 K7EIL1 84 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 CRYGAP11844 174 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 ZNF818PQ6ZRF7 136 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 ZNF721Q8TF20 911 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 HIGD1CA8MV81 97 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 PEX7O00628 323 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 CLEC2BQ92478 149 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 FXYD5Q96DB9 178 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 ZC2HC1AQ96GY0 325 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 ATG2AQ2TAZ0 1938 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 ZNF876PQ49A33 203 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 SPANXN1Q5VSR9 72 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 COX8CQ7Z4L0 72 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 SRXN1Q9BYN0 137 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 NUP210LQ5VU65 1888 aa3.98□□□□□ -1.77
USP54-216ENST00000498143 DAND5Q8N907 189 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 SHANK2-AS3Q9BTD1 123 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 ZNF106Q9H2Y7 1883 aaKnown RBP3.97□□□□□ -1.77
USP54-216ENST00000498143 A6NED7 52 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 M0R381 172 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 CT62P0C5K7 136 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 ERCC8Q13216 396 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 WDR86Q86TI4 376 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 ORMDL3Q8N138 153 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 TMEM52Q8NDY8 209 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 ZNF706Q9Y5V0 76 aaPredicted RBP3.97□□□□□ -1.77
USP54-216ENST00000498143 DMXL2Q8TDJ6 3036 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.97□□□□□ -1.77
USP54-216ENST00000498143 LOXP28300 417 aaPredicted RBP3.97□□□□□ -1.77
USP54-216ENST00000498143 TMEM14EPQ6UXP3 125 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 SPATA12Q7Z6I5 190 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 CARD19Q96LW7 228 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 LCTP09848 1927 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 IGLV2-18A0A075B6J9 118 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 CTRLP40313 264 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 KTN1-AS1Q86SY8 53 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 LINC00312Q9Y6C7 94 aa3.97□□□□□ -1.77
USP54-216ENST00000498143 TRAV3A0A0B4J244 114 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 A0A1B0GUT8 65 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 FRMD6-AS1P0C7T7 363 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 PIGYQ3MUY2 71 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 ZC2HC1BQ5TFG8 222 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 Q6ZVQ6 151 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 LCA10Q71F78 164 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 TRAV13-2A0A0B4J235 113 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 BGLAPP02818 100 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 SLC50A1Q9BRV3 221 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 COL12A1Q99715 3063 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 EML5Q05BV3 1969 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 CHKB-CPT1BH3BT56 60 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 EFNA2O43921 213 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 CGAP01215 116 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 C10orf113Q5VZT2 155 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 Q6YL49 198 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 Q8N1Y9 231 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 FAM216BQ8N7L0 139 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 CDIP1Q9H305 208 aa3.96□□□□□ -1.78
USP54-216ENST00000498143 RPP21Q9H633 154 aaKnown RBP3.96□□□□□ -1.78
USP54-216ENST00000498143 IGHV3OR15-7A0A075B7D8 119 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 IGHV1-18A0A0C4DH31 117 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 NXPH4O95158 308 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 PHLDA1Q8WV24 401 aaPredicted RBP3.95□□□□□ -1.78
USP54-216ENST00000498143 GPHA2Q96T91 129 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 PLA2G2DQ9UNK4 145 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 TACC2O95359 2948 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 IGLV1-36A0A0B4J1U3 117 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 ETV2O00321 342 aaPredicted RBP3.95□□□□□ -1.78
USP54-216ENST00000498143 ATP5EP2Q5VTU8 51 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 VMO1Q7Z5L0 202 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 WFDC3Q8IUB2 231 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 KRTAP1-3Q8IUG1 177 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 PIFOQ8TCI5 191 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 KIAA2026Q5HYC2 2103 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 NCKAP5O14513 1909 aa3.95□□□□□ -1.78
USP54-216ENST00000498143 FXYD7P58549 80 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms