RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 DCAF8L2P0C7V8 631 aa10.36□□□□□ -0.75
USP54-216ENST00000498143 AEBP2Q6ZN18 517 aaPredicted RBP10.06□□□□□ -0.8
USP54-216ENST00000498143 ABCC9O60706 1549 aa9.93□□□□□ -0.82
USP54-216ENST00000498143 TRIM41Q8WV44 630 aa9.91□□□□□ -0.82
USP54-216ENST00000498143 NISCHQ9Y2I1 1504 aa9.87□□□□□ -0.83
USP54-216ENST00000498143 CHIC1Q5VXU3 224 aa9.82□□□□□ -0.84
USP54-216ENST00000498143 DNAJC5Q9H3Z4 198 aa9.59□□□□□ -0.87
USP54-216ENST00000498143 PABPN1Q86U42 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP54-216ENST00000498143 TRHP20396 242 aaPredicted RBP9.57□□□□□ -0.88
USP54-216ENST00000498143 DNAJC5BQ9UF47 199 aa9.43□□□□□ -0.9
USP54-216ENST00000498143 MYT1Q01538 1121 aa9.11□□□□□ -0.95
USP54-216ENST00000498143 ERCC6Q03468 1493 aa9.1□□□□□ -0.95
USP54-216ENST00000498143 FBLN2P98095 1184 aa9.02□□□□□ -0.96
USP54-216ENST00000498143 CECR2Q9BXF3 1484 aa8.93□□□□□ -0.98
USP54-216ENST00000498143 CYB5RLQ6IPT4 315 aa8.91□□□□□ -0.98
USP54-216ENST00000498143 OSCARQ8IYS5 282 aa8.9□□□□□ -0.98
USP54-216ENST00000498143 FAM9AQ8IZU1 332 aaPredicted RBP8.88□□□□□ -0.99
USP54-216ENST00000498143 PELP1Q8IZL8 1130 aaKnown RBP8.87□□□□□ -0.99
USP54-216ENST00000498143 NPM1P06748 294 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP54-216ENST00000498143 SLC24A1O60721 1099 aa8.86□□□□□ -0.99
USP54-216ENST00000498143 PLPPR3Q6T4P5 718 aa8.77□□□□□ -1.01
USP54-216ENST00000498143 EHMT2Q96KQ7 1210 aa8.76□□□□□ -1.01
USP54-216ENST00000498143 RB1CC1Q8TDY2 1594 aa8.76□□□□□ -1.01
USP54-216ENST00000498143 ILDR1Q86SU0 546 aaPredicted RBP8.73□□□□□ -1.01
USP54-216ENST00000498143 TTBK1Q5TCY1 1321 aaPredicted RBP8.69□□□□□ -1.02
USP54-216ENST00000498143 PHF23Q9BUL5 403 aaPredicted RBP8.69□□□□□ -1.02
USP54-216ENST00000498143 SCAF1Q9H7N4 1312 aaKnown RBP8.66□□□□□ -1.02
USP54-216ENST00000498143 MYT1LQ9UL68 1186 aa8.63□□□□□ -1.03
USP54-216ENST00000498143 DISP3Q9P2K9 1392 aa8.62□□□□□ -1.03
USP54-216ENST00000498143 CHMP7Q8WUX9 453 aaPredicted RBP8.57□□□□□ -1.04
USP54-216ENST00000498143 ERICH6Q7L0X2 663 aa8.53□□□□□ -1.04
USP54-216ENST00000498143 ARID4BQ4LE39 1312 aaPredicted RBP8.51□□□□□ -1.05
USP54-216ENST00000498143 ESF1Q9H501 851 aaKnown RBP8.5□□□□□ -1.05
USP54-216ENST00000498143 FOXD1Q16676 465 aa8.48□□□□□ -1.05
USP54-216ENST00000498143 CUX2O14529 1486 aa8.46□□□□□ -1.05
USP54-216ENST00000498143 SENP3Q9H4L4 574 aaPredicted RBP8.45□□□□□ -1.06
USP54-216ENST00000498143 LMTK3Q96Q04 1460 aa8.45□□□□□ -1.06
USP54-216ENST00000498143 DCAF8L1A6NGE4 600 aa8.44□□□□□ -1.06
USP54-216ENST00000498143 FBXO41Q8TF61 875 aa8.39□□□□□ -1.07
USP54-216ENST00000498143 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.38□□□□□ -1.07
USP54-216ENST00000498143 HNRNPUL2Q1KMD3 747 aaKnown RBP8.38□□□□□ -1.07
USP54-216ENST00000498143 NACADO15069 1562 aa8.37□□□□□ -1.07
USP54-216ENST00000498143 PDS5BQ9NTI5 1447 aa8.36□□□□□ -1.07
USP54-216ENST00000498143 SCRIBQ14160 1630 aa8.35□□□□□ -1.07
USP54-216ENST00000498143 SOCS7O14512 581 aa8.35□□□□□ -1.07
USP54-216ENST00000498143 FAM69CQ0P6D2 419 aa8.34□□□□□ -1.07
USP54-216ENST00000498143 CCDC180Q9P1Z9 1646 aa8.33□□□□□ -1.08
USP54-216ENST00000498143 CC2D2AQ9P2K1 1620 aa8.28□□□□□ -1.08
USP54-216ENST00000498143 SHROOM4Q9ULL8 1493 aa8.24□□□□□ -1.09
USP54-216ENST00000498143 RANGAP1P46060 587 aaPredicted RBP8.24□□□□□ -1.09
USP54-216ENST00000498143 SMARCA2P51531 1590 aa8.22□□□□□ -1.09
USP54-216ENST00000498143 DMRT2Q9Y5R5 561 aa8.17□□□□□ -1.1
USP54-216ENST00000498143 MLECQ14165 292 aa8.15□□□□□ -1.11
USP54-216ENST00000498143 PIP4K2BP78356 416 aa8.14□□□□□ -1.11
USP54-216ENST00000498143 UBAP1LF5GYI3 381 aa8.13□□□□□ -1.11
USP54-216ENST00000498143 ATP1B4Q9UN42 357 aaPredicted RBP8.13□□□□□ -1.11
USP54-216ENST00000498143 BCANQ96GW7 911 aa8.12□□□□□ -1.11
USP54-216ENST00000498143 MEX3CQ5U5Q3 659 aaKnown RBP8.11□□□□□ -1.11
USP54-216ENST00000498143 EIF4G1Q04637 1599 aaKnown RBP8.1□□□□□ -1.11
USP54-216ENST00000498143 KCNH8Q96L42 1107 aa8.09□□□□□ -1.11
USP54-216ENST00000498143 PRKCSHP14314 528 aaPredicted RBP8.05□□□□□ -1.12
USP54-216ENST00000498143 APLP2Q06481 763 aa8.04□□□□□ -1.12
USP54-216ENST00000498143 CERKQ8TCT0 537 aa8.03□□□□□ -1.12
USP54-216ENST00000498143 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP54-216ENST00000498143 BAZ1BQ9UIG0 1483 aaKnown RBP8.02□□□□□ -1.12
USP54-216ENST00000498143 C14orf37Q86TY3 774 aa8.02□□□□□ -1.13
USP54-216ENST00000498143 A0A0G2JS52 829 aa8.01□□□□□ -1.13
USP54-216ENST00000498143 DAXXQ9UER7 740 aaPredicted RBP8.01□□□□□ -1.13
USP54-216ENST00000498143 SF3B2Q13435 895 aaKnown RBP8.01□□□□□ -1.13
USP54-216ENST00000498143 TOM1O60784 492 aa7.98□□□□□ -1.13
USP54-216ENST00000498143 KCNA4P22459 653 aa7.98□□□□□ -1.13
USP54-216ENST00000498143 HSPA2P54652 639 aa7.96□□□□□ -1.14
USP54-216ENST00000498143 CEP164Q9UPV0 1460 aa7.95□□□□□ -1.14
USP54-216ENST00000498143 ARID3CA6NKF2 412 aa7.94□□□□□ -1.14
USP54-216ENST00000498143 NUTM2BA6NNL0 878 aaPredicted RBP7.94□□□□□ -1.14
USP54-216ENST00000498143 NUTM2EB1AL46 878 aaPredicted RBP7.94□□□□□ -1.14
USP54-216ENST00000498143 NUTM2DQ5VT03 806 aaPredicted RBP7.94□□□□□ -1.14
USP54-216ENST00000498143 NUTM2AQ8IVF1 878 aaPredicted RBP7.94□□□□□ -1.14
USP54-216ENST00000498143 SLC4A1APQ9BWU0 796 aaKnown RBP7.94□□□□□ -1.14
USP54-216ENST00000498143 NESP48681 1621 aa7.93□□□□□ -1.14
USP54-216ENST00000498143 CADPSQ9ULU8 1353 aa7.92□□□□□ -1.14
USP54-216ENST00000498143 STAG3Q9UJ98 1225 aa7.92□□□□□ -1.14
USP54-216ENST00000498143 MRC2Q9UBG0 1479 aa7.92□□□□□ -1.14
USP54-216ENST00000498143 RTN4Q9NQC3 1192 aaKnown RBP7.91□□□□□ -1.14
USP54-216ENST00000498143 MYO15BQ96JP2 1530 aa7.91□□□□□ -1.14
USP54-216ENST00000498143 ILDR2Q71H61 639 aa7.9□□□□□ -1.14
USP54-216ENST00000498143 ZRANB1Q9UGI0 708 aa7.9□□□□□ -1.15
USP54-216ENST00000498143 PPP1R1BQ9UD71 204 aaPredicted RBP7.89□□□□□ -1.15
USP54-216ENST00000498143 SYNJ2O15056 1496 aa7.89□□□□□ -1.15
USP54-216ENST00000498143 HAP1P54257 671 aaPredicted RBP7.88□□□□□ -1.15
USP54-216ENST00000498143 TRIM52Q96A61 297 aa7.86□□□□□ -1.15
USP54-216ENST00000498143 RBM33Q96EV2 1170 aaKnown RBP7.85□□□□□ -1.15
USP54-216ENST00000498143 ARHGEF11O15085 1522 aa7.84□□□□□ -1.15
USP54-216ENST00000498143 TDRD9Q8NDG6 1382 aaKnown RBP7.83□□□□□ -1.16
USP54-216ENST00000498143 AMER1Q5JTC6 1135 aaPredicted RBP7.83□□□□□ -1.16
USP54-216ENST00000498143 KDM4FA0A1W2PPD8 638 aa7.82□□□□□ -1.16
USP54-216ENST00000498143 SENP3-EIF4A1A0A087X0R7 540 aa7.81□□□□□ -1.16
USP54-216ENST00000498143 ADRA2BP18089 450 aa7.81□□□□□ -1.16
USP54-216ENST00000498143 BAZ1AQ9NRL2 1556 aaPredicted RBP7.81□□□□□ -1.16
USP54-216ENST00000498143 EIF5BO60841 1220 aaKnown RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms