RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YPL107W	Q02873	248 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	RNH1	Q04740	348 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	YOL159C-A	Q3E769	90 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	ARO1	P08566	1588 aa	Known RBP	5.78	□□□□□ -1.48
NUP1	YOR098C	APE1	P14904	514 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	PUP2	P32379	260 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	BEM4	P39011	633 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	MRX6	P48564	524 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	RAD33	Q04231	177 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	ARP9	Q05123	467 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	DIN7	Q12086	430 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	SED4	P25365	1065 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	GCS1	P35197	352 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	UTP9	P38882	575 aa	Known RBP	5.78	□□□□□ -1.48
NUP1	YOR098C	PRM2	P40534	656 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	YIR014W	P40570	242 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	SIP4	P46954	829 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	VTC4	P47075	721 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	OAZ1	Q02803	292 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	YLR407W	Q06070	228 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	ZRT2	Q12436	422 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	IQG1	Q12280	1495 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	BCK2	P33306	851 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	MAC1	P35192	417 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	RTS1	P38903	757 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	PIK1	P39104	1066 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	NUP85	P46673	744 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	YJR098C	P47139	656 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	HST1	P53685	503 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	BRE5	P53741	515 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	YSA1	Q01976	231 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	GYL1	Q04322	720 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	SKM1	Q12469	655 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	RPA190	P10964	1664 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	ADE3	P07245	946 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	PCT1	P13259	424 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	PPQ1	P32945	549 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	CTF13	P35203	478 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	MTC3	P53077	123 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	DSD1	P53095	428 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	NNF2	P53253	936 aa		5.77	□□□□□ -1.49
NUP1	YOR098C	ERB1	Q04660	807 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	RSA3	Q05942	220 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.77	□□□□□ -1.49	not detected
NUP1	YOR098C	GET3	Q12154	354 aa	Known RBP	5.77	□□□□□ -1.49
NUP1	YOR098C	ARG82	P07250	355 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	LCB1	P25045	558 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	DGR2	P32330	852 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	SAP190	P36123	1033 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	FMP10	P40098	244 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YJR061W	P40355	935 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	ART5	P53244	586 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	SRT1	Q03175	343 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YLH47	Q06493	454 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YDL073W	Q07454	984 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	CMP2	P14747	604 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	RIT1	P23796	513 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	MF(ALPHA)2	P32435	120 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	SMI1	P32566	505 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	LAS1	P36146	502 aa	Predicted RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	GND1	P38720	489 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	SET5	P38890	526 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	MNT2	P53059	558 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	MET32	Q12041	191 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YLL058W	Q12198	575 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YMR084W	A2P2R3	262 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	PRP22	P24384	1145 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	GCV1	P48015	400 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	LEE1	Q02799	301 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	NGL3	Q03210	505 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	YMR111C	Q04461	462 aa	Predicted RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	DPB4	Q04603	196 aa	Known RBP	5.76	□□□□□ -1.49
NUP1	YOR098C	RSF1	Q05043	376 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	APC5	Q08683	685 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	TGL5	Q12043	749 aa		5.76	□□□□□ -1.49
NUP1	YOR098C	RPS17A	P02407	136 aa	Known RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	RPS17B	P14127	136 aa	Known RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	APN1	P22936	367 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	DEF1	P35732	738 aa	Known RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	STB6	P36085	766 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	FLR1	P38124	548 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	TAF5	P38129	798 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	MSB3	P48566	633 aa	Predicted RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	YGR045C	P53229	120 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	YNR071C	P53757	342 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	CFT2	Q12102	859 aa	Predicted RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	FRD1	P32614	470 aa	Known RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	UIP5	P36137	443 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	PSD1	P39006	500 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	NOP9	P47077	666 aa	Known RBP	5.75	□□□□□ -1.49
NUP1	YOR098C	YPL277C	Q08989	487 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	HUA2	Q12134	243 aa		5.75	□□□□□ -1.49
NUP1	YOR098C	NOT3	P06102	836 aa	Known RBP	5.74	□□□□□ -1.49
NUP1	YOR098C	TPK1	P06244	397 aa		5.74	□□□□□ -1.49
NUP1	YOR098C	SEC53	P07283	254 aa	Known RBP	5.74	□□□□□ -1.49
NUP1	YOR098C	MRPL36	P36531	177 aa		5.74	□□□□□ -1.49
NUP1	YOR098C	GCD10	P41814	478 aa		5.74	□□□□□ -1.49
NUP1	YOR098C	FOL2	P51601	243 aa	Known RBP	5.74	□□□□□ -1.49
NUP1	YOR098C	CTI6	Q08923	506 aa		5.74	□□□□□ -1.49
NUP1	YOR098C	YBR126W-A	Q8TGU7	68 aa		5.74	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms