RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	GAC1	P28006	793 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	GCD7	P32502	381 aa	Predicted RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	YKL050C	P35736	922 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	OAF3	P36023	863 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	YEN1	P40028	759 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	PCI8	P40512	444 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	FAR3	P46671	204 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	URB2	P47108	1174 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	BUL1	P48524	976 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	COG2	P53271	262 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	YMR178W	Q03219	274 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	NUP53	Q03790	475 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	TMN2	Q04562	672 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	RCO1	Q04779	684 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	THI73	Q07904	523 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	HAL9	Q12180	1030 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	SFI1	Q12369	946 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	0.99	□□□□□ -2.25	not detected
RKR1	YMR247C	CYB2	P00175	591 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	RPL7A	P05737	244 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	CTT1	P06115	562 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	GLN4	P13188	809 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	CNE1	P27825	502 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	KES1	P35844	434 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	YNK1	P36010	153 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	LNP1	P38878	278 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	DUN1	P39009	513 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	MNN1	P39106	762 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	PCL6	P40038	420 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	RGI2	P40188	164 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	IAH1	P41734	238 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	NOP9	P47077	666 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	TFB2	Q02939	513 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	ROT1	Q03691	256 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	MTQ2	Q03920	221 aa	Predicted RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	YDL086W	Q07505	273 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	YLR040C	Q07988	224 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	NUS1	Q12063	375 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	TAH18	Q12181	623 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	RKI1	Q12189	258 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	RPL7B	Q12213	244 aa	Known RBP	0.99	□□□□□ -2.25
RKR1	YMR247C	YER175W-A	Q8TGU4	54 aa		0.99	□□□□□ -2.25
RKR1	YMR247C	CPA2	P03965	1118 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	RPL8A	P17076	256 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	EXO70	P19658	623 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	PTP1	P25044	335 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	NIC96	P34077	839 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	TAH11	P47112	604 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YGR237C	P50089	785 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	SPC105	P53148	917 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	CTL1	Q03220	320 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	VPS64	Q03944	604 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	EIS1	Q05050	843 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	YPR071W	Q12346	211 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ERG27	Q12452	347 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	NUP145	P49687	1317 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	TY1B-DR4	Q07793	1604 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	SST2	P11972	698 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	BET2	P20133	325 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	HIR1	P32479	840 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	DSS4	P32601	143 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	STE5	P32917	917 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	BET3	P36149	193 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YBR071W	P38243	211 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	FMO1	P38866	432 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	SEC31	P38968	1273 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	JHD1	P40034	492 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	CEP3	P40969	608 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	TDA10	P42938	290 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ARC1	P46672	376 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	BNA3	P47039	444 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	MAL11	P53048	616 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	VPS73	P53142	486 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	YGR151C	P53287	111 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	RNH70	P53331	553 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YNL181W	P53878	407 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	INA17	Q02888	182 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	MTG1	Q03151	367 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	TOS4	Q06266	489 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YFT2	Q06676	274 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ULA1	Q12059	462 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YPR027C	Q12079	277 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	UBX3	Q12229	455 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	CDC9	P04819	755 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	MRP2	P10663	115 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	HSC82	P15108	705 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	PRE8	P23639	250 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ADY2	P25613	283 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YKU70	P32807	602 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	MFT1	P33441	392 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	ASK1	P35734	292 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	AAP1	P37898	856 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	GDT1	P38301	280 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	YIL161W	P40449	235 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	SSN8	P47821	323 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	RTA1	P53047	317 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	GTF1	P53260	183 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	DIP5	P53388	608 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YNR029C	P53729	429 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	UBX4	P54730	416 aa		0.98	□□□□□ -2.25

Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms