RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	LAM4	P38800	1345 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	RPL19A	P0CX82	189 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	RPL19B	P0CX83	189 aa	Predicted RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	RAD18	P10862	487 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	GLK1	P17709	500 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	ACE2	P21192	770 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	RET1	P22276	1149 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	SEC14	P24280	304 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	CCR4	P31384	837 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	SSO1	P32867	290 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	CKB2	P38930	258 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	SAH1	P39954	449 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	SAP1	P39955	897 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	LSG1	P53145	640 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	RPT4	P53549	437 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	ERO1	Q03103	563 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	UTP21	Q06078	939 aa	Predicted RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	LCB5	Q06147	687 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	YLH47	Q06493	454 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	CUE5	Q08412	411 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	SLK19	Q08581	821 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	NSI1	Q12457	570 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	HMG1	P12683	1054 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	PDC5	P16467	563 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	FRD1	P32614	470 aa	Known RBP	4.79	□□□□□ -1.64
CDC48	YDL126C	EMC3	P36039	253 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	PFF1	P38244	976 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	MEF2	P39677	819 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	UBX2	Q04228	584 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	TRE2	Q08693	809 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	HMI1	Q12039	706 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	SLP1	Q12232	587 aa		4.79	□□□□□ -1.64
CDC48	YDL126C	CPA2	P03965	1118 aa	Known RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	SPS1	P08458	490 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	ERG3	P32353	365 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	NPL6	P32832	435 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	GIC1	P38785	314 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	RPN3	P40016	523 aa	Known RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	IRC8	P47046	822 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	VPS53	P47061	822 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	AIM14	P53109	570 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	HFD1	Q04458	532 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	INM2	Q05533	292 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	REX3	Q12090	404 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	APN1	P22936	367 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	PEP3	P27801	918 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	HSM3	P38348	480 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	GZF3	P42944	551 aa	Known RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	CTF18	P49956	741 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	IST1	P53843	298 aa	Predicted RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	ARP5	P53946	755 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	TSR1	Q07381	788 aa	Known RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	ESC8	Q08119	714 aa		4.78	□□□□□ -1.64
CDC48	YDL126C	CLP1	Q08685	445 aa	Predicted RBP	4.78	□□□□□ -1.64
CDC48	YDL126C	RPS21A	P0C0V8	87 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	FPS1	P23900	669 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PHO84	P25297	587 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	SRO9	P25567	434 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	DAL80	P26343	269 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	AAR2	P32357	355 aa	Predicted RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	HOG1	P32485	435 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PAH1	P32567	862 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	REC104	P33323	182 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	SPL2	P38839	148 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	GPB2	P39717	880 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	NOP16	P40007	231 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	TED1	P40533	473 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	YIR042C	P40586	236 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	ASI1	P54074	624 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PRO2	P54885	456 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	RAD33	Q04231	177 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PSF3	Q12146	194 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	YLL058W	Q12198	575 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	KRE2	P27809	442 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PPQ1	P32945	549 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PRX1	P34227	261 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	YHL017W	P38745	532 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	AXL1	P40851	1208 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	POL31	P46957	487 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	IRC4	Q03036	179 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PRP42	Q03776	544 aa	Known RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	OPY2	Q06810	360 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	PEX19	Q07418	342 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	KEL3	Q08979	651 aa	Predicted RBP	4.77	□□□□□ -1.65
CDC48	YDL126C	ACM1	Q08981	209 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	ELG1	Q12050	791 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	SFI1	Q12369	946 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	SPO21	Q12411	609 aa		4.77	□□□□□ -1.65
CDC48	YDL126C	GPM1	P00950	247 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	CAF20	P12962	161 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	VPS1	P21576	704 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	MRPL25	P23369	157 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	BUD14	P27637	709 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
CDC48	YDL126C	KDX1	P36005	433 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	YRO2	P38079	344 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	LIN1	P38852	340 aa	Predicted RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	VID28	P40547	921 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	DSL1	P53847	754 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	ERB1	Q04660	807 aa	Known RBP	4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 20 ms