RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeastyeast

Gene PRE6, Length 765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE6YOL038W TRM112P53738 135 aaPredicted RBP11.18□□□□□ -0.62
PRE6YOL038W AIM32Q04689 311 aa11.18□□□□□ -0.62
PRE6YOL038W SIL1Q08199 421 aa11.18□□□□□ -0.62
PRE6YOL038W CCP1P00431 361 aa11.17□□□□□ -0.62
PRE6YOL038W GGA2P38817 585 aaKnown RBP11.17□□□□□ -0.62
PRE6YOL038W MMM1P41800 426 aa11.17□□□□□ -0.62
PRE6YOL038W RSC1P53236 928 aa11.17□□□□□ -0.62
PRE6YOL038W RPN4Q03465 531 aa11.17□□□□□ -0.62
PRE6YOL038W RTN1Q04947 295 aaKnown RBP11.17□□□□□ -0.62
PRE6YOL038W SPO21Q12411 609 aa11.17□□□□□ -0.62
PRE6YOL038W MSF1P08425 469 aa11.16□□□□□ -0.62
PRE6YOL038W MET22P32179 357 aa11.16□□□□□ -0.62
PRE6YOL038W PTC3P34221 468 aaKnown RBP11.16□□□□□ -0.62
PRE6YOL038W HSL7P38274 827 aa11.16□□□□□ -0.62
PRE6YOL038W YPR078CQ06813 372 aa11.16□□□□□ -0.62
PRE6YOL038W YOR059CQ08448 450 aaKnown RBP11.16□□□□□ -0.62
PRE6YOL038W NDD1Q08887 554 aa11.16□□□□□ -0.62
PRE6YOL038W ARP7Q12406 477 aa11.16□□□□□ -0.62
PRE6YOL038W UBR1P19812 1950 aa11.16□□□□□ -0.62
PRE6YOL038W PAB1P04147 577 aaKnown RBP RIP-Chip data11.15□□□□□ -0.62 RIP-Chip
PRE6YOL038W KAR3P17119 729 aa11.15□□□□□ -0.62
PRE6YOL038W AEP2P22136 580 aa11.15□□□□□ -0.62
PRE6YOL038W IME2P32581 645 aa11.15□□□□□ -0.62
PRE6YOL038W SRB2P34162 210 aa11.15□□□□□ -0.62
PRE6YOL038W TCD2P36101 447 aaKnown RBP11.15□□□□□ -0.62
PRE6YOL038W PXL1P36166 706 aa11.15□□□□□ -0.62
PRE6YOL038W DUN1P39009 513 aa11.15□□□□□ -0.62
PRE6YOL038W VFA1P40080 203 aa11.15□□□□□ -0.62
PRE6YOL038W YNR065CP53751 1116 aa11.15□□□□□ -0.62
PRE6YOL038W YDR222WQ04925 415 aa11.15□□□□□ -0.62
PRE6YOL038W PMT7Q06644 662 aa11.15□□□□□ -0.62
PRE6YOL038W MSH3P25336 1018 aa11.14□□□□□ -0.63
PRE6YOL038W PSE1P32337 1089 aaKnown RBP11.14□□□□□ -0.63
PRE6YOL038W KTR4P38131 464 aa11.14□□□□□ -0.63
PRE6YOL038W RTT107P38850 1070 aa11.14□□□□□ -0.63
PRE6YOL038W YAP5P40574 245 aa11.14□□□□□ -0.63
PRE6YOL038W ELP3Q02908 557 aaKnown RBP11.14□□□□□ -0.63
PRE6YOL038W UME1Q03010 460 aa11.14□□□□□ -0.63
PRE6YOL038W YCG1Q06680 1035 aa11.14□□□□□ -0.63
PRE6YOL038W APC5Q08683 685 aa11.14□□□□□ -0.63
PRE6YOL038W RRN6P32786 894 aa11.13□□□□□ -0.63
PRE6YOL038W SGE1P33335 543 aa11.13□□□□□ -0.63
PRE6YOL038W KTR7P40504 517 aa11.13□□□□□ -0.63
PRE6YOL038W KTR6P54070 446 aa11.13□□□□□ -0.63
PRE6YOL038W POL2P21951 2222 aaKnown RBP11.12□□□□□ -0.63
PRE6YOL038W IRA1P18963 3092 aa11.12□□□□□ -0.63
PRE6YOL038W ARF2P19146 181 aaKnown RBP11.12□□□□□ -0.63
PRE6YOL038W YIH1P25637 258 aa11.12□□□□□ -0.63
PRE6YOL038W GIP1P38229 639 aa11.12□□□□□ -0.63
PRE6YOL038W UBP7P40453 1071 aa11.12□□□□□ -0.63
PRE6YOL038W SNZ3P43545 298 aa11.12□□□□□ -0.63
PRE6YOL038W NPY1P53164 384 aa11.12□□□□□ -0.63
PRE6YOL038W HOP2P53187 214 aa11.12□□□□□ -0.63
PRE6YOL038W SNZ2P53824 298 aa11.12□□□□□ -0.63
PRE6YOL038W TDA7P53882 636 aaPredicted RBP11.12□□□□□ -0.63
PRE6YOL038W INA17Q02888 182 aa11.12□□□□□ -0.63
PRE6YOL038W YMR206WQ03695 313 aa11.12□□□□□ -0.63
PRE6YOL038W GYL1Q04322 720 aa11.12□□□□□ -0.63
PRE6YOL038W HEL2Q05580 639 aaKnown RBP11.12□□□□□ -0.63
PRE6YOL038W YCS4Q06156 1176 aa11.12□□□□□ -0.63
PRE6YOL038W SVS1Q12254 260 aa11.12□□□□□ -0.63
PRE6YOL038W PUT4P15380 627 aa11.11□□□□□ -0.63
PRE6YOL038W VMA4P22203 233 aaKnown RBP11.11□□□□□ -0.63
PRE6YOL038W URA8P38627 578 aaPredicted RBP11.11□□□□□ -0.63
PRE6YOL038W WSC4P38739 605 aa11.11□□□□□ -0.63
PRE6YOL038W OSW5P40219 148 aa11.11□□□□□ -0.63
PRE6YOL038W TMA108P40462 946 aa11.11□□□□□ -0.63
PRE6YOL038W ARA2Q04212 335 aa11.11□□□□□ -0.63
PRE6YOL038W AIM39Q08223 395 aa11.11□□□□□ -0.63
PRE6YOL038W HMI1Q12039 706 aa11.11□□□□□ -0.63
PRE6YOL038W CSF1Q12150 2958 aa11.11□□□□□ -0.63
PRE6YOL038W SEC63P14906 663 aa11.1□□□□□ -0.63
PRE6YOL038W SAP190P36123 1033 aa11.1□□□□□ -0.63
PRE6YOL038W GDH3P39708 457 aa11.1□□□□□ -0.63
PRE6YOL038W SNG1P46950 547 aa11.1□□□□□ -0.63
PRE6YOL038W YMR1P47147 688 aaKnown RBP RIP-Chip data11.1□□□□□ -0.63not detected
PRE6YOL038W YGR283CP53336 341 aaPredicted RBP11.1□□□□□ -0.63
PRE6YOL038W JIP5Q06214 492 aaPredicted RBP11.1□□□□□ -0.63
PRE6YOL038W THI20Q08224 551 aa11.1□□□□□ -0.63
PRE6YOL038W SEC1P30619 724 aaKnown RBP11.09□□□□□ -0.63
PRE6YOL038W ABD1P32783 436 aaPredicted RBP11.09□□□□□ -0.63
PRE6YOL038W SMA1Q02651 245 aa11.09□□□□□ -0.63
PRE6YOL038W RSB1Q08417 382 aa11.09□□□□□ -0.63
PRE6YOL038W YRR1Q12172 810 aa11.09□□□□□ -0.63
PRE6YOL038W MET16P18408 261 aaPredicted RBP11.08□□□□□ -0.64
PRE6YOL038W GUT1P32190 709 aa11.08□□□□□ -0.64
PRE6YOL038W RML2P32611 393 aa11.08□□□□□ -0.64
PRE6YOL038W STE13P33894 931 aa11.08□□□□□ -0.64
PRE6YOL038W YKL050CP35736 922 aa11.08□□□□□ -0.64
PRE6YOL038W RKM3P38222 552 aa11.08□□□□□ -0.64
PRE6YOL038W HXT8P40886 569 aa11.08□□□□□ -0.64
PRE6YOL038W RTT101P47050 842 aa11.08□□□□□ -0.64
PRE6YOL038W YJR079WP47126 109 aa11.08□□□□□ -0.64
PRE6YOL038W STR2P47164 639 aa11.08□□□□□ -0.64
PRE6YOL038W PRP24P49960 444 aaKnown RBP11.08□□□□□ -0.64
PRE6YOL038W FLC3P53121 802 aa11.08□□□□□ -0.64
PRE6YOL038W HPF1Q05164 967 aa11.08□□□□□ -0.64
PRE6YOL038W SPO12P17123 173 aa11.07□□□□□ -0.64
PRE6YOL038W SEC6P32844 805 aa11.07□□□□□ -0.64
PRE6YOL038W JNM1P36224 373 aa11.07□□□□□ -0.64
Retrieved 100 of 5,963 RNA–protein pairs in 84.6 ms