RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	VID22	Q05934	901 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	IMH1	Q06704	911 aa	Known RBP	4.93	□□□□□ -1.62
NPL4	YBR170C	IWR1	Q07532	353 aa	Predicted RBP	4.93	□□□□□ -1.62
NPL4	YBR170C	TUB3	P09734	445 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	GUK1	P15454	187 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	MTC7	P32633	139 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	NOP16	P40007	231 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	PSF2	P40359	213 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	DPH1	P40487	425 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	RRT6	P53117	311 aa	Predicted RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	SNO2	P53823	222 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	HMO1	Q03973	246 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	VPS36	Q06696	566 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	TRM8	Q12009	286 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	TUB2	P02557	457 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	MIS1	P09440	975 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	CWH43	P25618	953 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	PAH1	P32567	862 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	YBR138C	P38277	524 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	IFA38	P38286	347 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	MSS4	P38994	779 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	PXA1	P41909	870 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	MET12	P46151	657 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	REC102	Q02721	264 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	CLU1	Q03690	1277 aa	Known RBP	4.92	□□□□□ -1.62
NPL4	YBR170C	ENT1	Q12518	454 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	ATG11	Q12527	1178 aa		4.92	□□□□□ -1.62
NPL4	YBR170C	YLR358C	O13565	187 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	YLR415C	O13578	112 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	LEU2	P04173	364 aa	Predicted RBP	4.91	□□□□□ -1.62
NPL4	YBR170C	AAC3	P18238	307 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	SEC21	P32074	935 aa	Known RBP	4.91	□□□□□ -1.62
NPL4	YBR170C	RPT3	P33298	428 aa	Known RBP	4.91	□□□□□ -1.62
NPL4	YBR170C	SIC1	P38634	284 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	YER010C	P40011	234 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	YNL195C	P40168	261 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	CTF18	P49956	741 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	PKH1	Q03407	766 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	MCM21	Q06675	368 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	SGO1	Q08490	590 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	PNS1	Q12412	539 aa		4.91	□□□□□ -1.62
NPL4	YBR170C	URA3	P03962	267 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	PRE4	P30657	266 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	FRD1	P32614	470 aa	Known RBP	4.9	□□□□□ -1.62
NPL4	YBR170C	RMA1	P36001	430 aa	Known RBP	4.9	□□□□□ -1.62
NPL4	YBR170C	YBR259W	P38338	688 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	YHR112C	P38716	378 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	ECM1	P39715	212 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	BIT61	P47041	543 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	PPN1	Q04119	674 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	CSR1	Q06705	408 aa	Known RBP	4.9	□□□□□ -1.62
NPL4	YBR170C	AAD4	Q07747	329 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	SWM1	Q12379	170 aa		4.9	□□□□□ -1.62
NPL4	YBR170C	ARG1	P22768	420 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	SWI4	P25302	1093 aa	Known RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	SET3	P36124	751 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	YEL068C	P39977	110 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	RIC1	P40395	1056 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	PRM2	P40534	656 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	GCV2	P49095	1034 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	SAP4	P53036	818 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	NCS6	P53088	359 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	GTF1	P53260	183 aa	Predicted RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	SQS1	P53866	767 aa	Known RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	CBK1	P53894	756 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	ACS1	Q01574	713 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	PLB2	Q03674	706 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	SPC19	Q03954	165 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	VBA4	Q04602	768 aa	Known RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	HOS1	Q12214	470 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	RPP2A	P05319	106 aa	Known RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	HMG2	P12684	1045 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	MRP7	P12687	371 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	RIT1	P23796	513 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	NPR3	P38742	1146 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	CCT3	P39077	534 aa	Known RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	FAF1	P40546	346 aa	Predicted RBP	4.89	□□□□□ -1.63
NPL4	YBR170C	CRD1	Q07560	283 aa		4.89	□□□□□ -1.63
NPL4	YBR170C	HIS5	P07172	385 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	ADE3	P07245	946 aa	Known RBP	4.88	□□□□□ -1.63
NPL4	YBR170C	ERG20	P08524	352 aa	Known RBP	4.88	□□□□□ -1.63
NPL4	YBR170C	RNR1	P21524	888 aa	Known RBP	4.88	□□□□□ -1.63
NPL4	YBR170C	CBF2	P32504	956 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	APT2	P36973	181 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	CDS1	P38221	457 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	BCD1	P38772	366 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	CHA4	P43634	648 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	TAH11	P47112	604 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	COX18	P53239	316 aa		4.88	□□□□□ -1.63
NPL4	YBR170C	SLU7	Q02775	382 aa	Known RBP	4.88	□□□□□ -1.63
NPL4	YBR170C	BET2	P20133	325 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	PRP22	P24384	1145 aa	Known RBP	4.87	□□□□□ -1.63
NPL4	YBR170C	ERG6	P25087	383 aa	Known RBP	4.87	□□□□□ -1.63
NPL4	YBR170C	UME6	P39001	836 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	VTC2	P43585	828 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	NOP9	P47077	666 aa	Known RBP	4.87	□□□□□ -1.63
NPL4	YBR170C	IMA1	P53051	589 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	YAP1802	P53309	568 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	ROT1	Q03691	256 aa		4.87	□□□□□ -1.63
NPL4	YBR170C	ARA2	Q04212	335 aa		4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms