RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	MDM20	Q12387	796 aa	Known RBP	0.86	□□□□□ -2.27
NIP1	YMR309C	RPS9B	P05755	195 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	TPK2	P06245	380 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	PHO8	P11491	566 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	HOG1	P32485	435 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	SEC6	P32844	805 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	MCD4	P36051	919 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	PXL1	P36166	706 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	MIP6	P38760	659 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	SPC97	P38863	823 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	YNL195C	P40168	261 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	NUP82	P40368	713 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	PCL10	P53124	433 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	NMA2	P53204	395 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	ORC1	P54784	914 aa	Predicted RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	ARG7	Q04728	441 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	IRC3	Q06683	689 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	ISA1	Q07821	250 aa	Predicted RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	ERG20	P08524	352 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	NTH1	P32356	751 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	BCS1	P32839	456 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	PEX6	P33760	1030 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	APL3	P38065	1025 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
NIP1	YMR309C	BIT2	P38346	545 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	KSP1	P38691	1029 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	CAF16	P43569	289 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	RSC8	P43609	557 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	OSW7	P43611	510 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	SET2	P46995	733 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	TY4A-J	P47023	414 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	NOP9	P47077	666 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	PIP2	P52960	996 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	ORM2	Q06144	216 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	YSH1	Q06224	779 aa	Predicted RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	THI22	Q06490	572 aa		0.85	□□□□□ -2.27
NIP1	YMR309C	CHS5	Q12114	671 aa	Known RBP	0.85	□□□□□ -2.27
NIP1	YMR309C	LEU2	P04173	364 aa	Predicted RBP	0.84	□□□□□ -2.27
NIP1	YMR309C	FEN2	P25621	512 aa	Known RBP	0.84	□□□□□ -2.27
NIP1	YMR309C	BEM3	P32873	1128 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	ASK1	P35734	292 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	RIM4	P38741	713 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	YIL077C	P40508	320 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	PCI8	P40512	444 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	PMT6	P42934	759 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	MPS3	P47069	682 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	AIM14	P53109	570 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	YGL117W	P53133	265 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	NGL2	Q03264	515 aa	Known RBP	0.84	□□□□□ -2.27
NIP1	YMR309C	POB3	Q04636	552 aa	Known RBP	0.84	□□□□□ -2.27
NIP1	YMR309C	VHS3	Q08438	674 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	FRE7	Q12333	620 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	MDM12	Q92328	271 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	YOR111W	Q99210	232 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	AI5_ALPHA	Q9ZZX1	630 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	LAM4	P38800	1345 aa		0.84	□□□□□ -2.27
NIP1	YMR309C	SRD1	P09007	221 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	HMG1	P12683	1054 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	TUP1	P16649	713 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	TSR4	P25040	408 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	KIN82	P25341	720 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	MRPL9	P31334	269 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	YKR018C	P36114	725 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	CTP1	P38152	299 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	COS111	P38308	924 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	YHR097C	P38809	366 aa	Known RBP	0.84	□□□□□ -2.28
NIP1	YMR309C	YHR202W	P38887	602 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	MNT3	P40549	630 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	MAF1	P41910	395 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	NMD5	P46970	1048 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	RFX1	P48743	811 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	DIP5	P53388	608 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	LSC1	P53598	329 aa	Known RBP	0.84	□□□□□ -2.28
NIP1	YMR309C	CPR8	P53728	308 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	YMR210W	Q03649	449 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	NUP53	Q03790	475 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	YDR179W-A	Q03983	463 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	VBA4	Q04602	768 aa	Known RBP	0.84	□□□□□ -2.28
NIP1	YMR309C	COG8	Q04632	607 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	RKI1	Q12189	258 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	GIN4	Q12263	1142 aa		0.84	□□□□□ -2.28
NIP1	YMR309C	SFL1	P20134	766 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	PRP22	P24384	1145 aa	Known RBP	0.83	□□□□□ -2.28
NIP1	YMR309C	MEF1	P25039	761 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	AAD3	P25612	363 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	MSH2	P25847	964 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	SFP1	P32432	683 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	MAL31	P38156	614 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	KHA1	P40309	873 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	THI6	P41835	540 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	SCW4	P53334	386 aa	Known RBP	0.83	□□□□□ -2.28
NIP1	YMR309C	SNF12	P53628	566 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	ERG13	P54839	491 aa	Known RBP	0.83	□□□□□ -2.28
NIP1	YMR309C	UGO1	Q03327	502 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	TRS23	Q03784	219 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	ATG33	Q06485	197 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	GUD1	Q07729	489 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	POM34	Q12445	299 aa		0.83	□□□□□ -2.28
NIP1	YMR309C	FRS1	P15624	595 aa	Known RBP	0.83	□□□□□ -2.28
NIP1	YMR309C	PMA2	P19657	947 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms