RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 YGL242CP53066 181 aa-0.81□□□□□ -2.54
snR40snR40 CPR8P53728 308 aa-0.81□□□□□ -2.54
snR40snR40 TEX1P53851 422 aaKnown RBP-0.81□□□□□ -2.54
snR40snR40 YDR179W-AQ03983 463 aa-0.81□□□□□ -2.54
snR40snR40 MUS81Q04149 632 aaPredicted RBP-0.81□□□□□ -2.54
snR40snR40 ECM16Q04217 1267 aaKnown RBP-0.81□□□□□ -2.54
snR40snR40 YLR281CQ05863 155 aa-0.81□□□□□ -2.54
snR40snR40 SAL1D6W196 494 aa-0.82□□□□□ -2.54
snR40snR40 RPS2P25443 254 aaKnown RBP-0.82□□□□□ -2.54
snR40snR40 SWC3P31376 625 aa-0.82□□□□□ -2.54
snR40snR40 RPC34P32910 317 aa-0.82□□□□□ -2.54
snR40snR40 YKL097CP34245 136 aa-0.82□□□□□ -2.54
snR40snR40 CIC1P38779 376 aaKnown RBP-0.82□□□□□ -2.54
snR40snR40 NUP60P39705 539 aa-0.82□□□□□ -2.54
snR40snR40 SAM37P50110 327 aa-0.82□□□□□ -2.54
snR40snR40 YPL109CQ02981 657 aa-0.82□□□□□ -2.54
snR40snR40 DIG1Q03063 452 aaKnown RBP-0.82□□□□□ -2.54
snR40snR40 YPR196WQ06595 470 aa-0.82□□□□□ -2.54
snR40snR40 PUP1P25043 261 aa-0.83□□□□□ -2.54
snR40snR40 GSY2P27472 705 aa-0.83□□□□□ -2.54
snR40snR40 YEL045CP32616 141 aa-0.83□□□□□ -2.54
snR40snR40 MCM7P38132 845 aa-0.83□□□□□ -2.54
snR40snR40 PIC2P40035 300 aa-0.83□□□□□ -2.54
snR40snR40 MTL1P53214 551 aa-0.83□□□□□ -2.54
snR40snR40 VPS30Q02948 557 aa-0.83□□□□□ -2.54
snR40snR40 RGC1Q06108 1083 aaKnown RBP-0.83□□□□□ -2.54
snR40snR40 GPI13Q07830 1017 aa-0.83□□□□□ -2.54
snR40snR40 ZRT2Q12436 422 aa-0.83□□□□□ -2.54
snR40snR40 ACO1P19414 778 aaKnown RBP RIP-Chip data-0.84□□□□□ -2.54not detected
snR40snR40 BUD14P27637 709 aa-0.84□□□□□ -2.54
snR40snR40 SEC1P30619 724 aaKnown RBP-0.84□□□□□ -2.54
snR40snR40 RPT3P33298 428 aaKnown RBP-0.84□□□□□ -2.54
snR40snR40 TTI1P36097 1038 aa-0.84□□□□□ -2.54
snR40snR40 GLO3P38682 493 aaKnown RBP-0.84□□□□□ -2.54
snR40snR40 BZZ1P38822 633 aa-0.84□□□□□ -2.54
snR40snR40 YMR210WQ03649 449 aa-0.84□□□□□ -2.54
snR40snR40 GAD1Q04792 585 aa-0.84□□□□□ -2.54
snR40snR40 DAL4Q04895 635 aa-0.84□□□□□ -2.54
snR40snR40 SPO75Q07798 868 aa-0.84□□□□□ -2.54
snR40snR40 RDL1Q12305 139 aaKnown RBP-0.84□□□□□ -2.54
snR40snR40 CLF1Q12309 687 aaPredicted RBP-0.84□□□□□ -2.54
snR40snR40 RPL7AP05737 244 aaKnown RBP-0.85□□□□□ -2.55
snR40snR40 ABF1P14164 731 aa-0.85□□□□□ -2.55
snR40snR40 MRPL7P36519 292 aa-0.85□□□□□ -2.55
snR40snR40 HSL7P38274 827 aa-0.85□□□□□ -2.55
snR40snR40 YJL070CP40361 888 aa-0.85□□□□□ -2.55
snR40snR40 QDR1P40475 563 aa-0.85□□□□□ -2.55
snR40snR40 PFA3P42836 336 aa-0.85□□□□□ -2.55
snR40snR40 YJL043WP47053 257 aa-0.85□□□□□ -2.55
snR40snR40 TIS11P47977 285 aa-0.85□□□□□ -2.55
snR40snR40 GYP7P48365 746 aa-0.85□□□□□ -2.55
snR40snR40 CUL3P53202 744 aa-0.85□□□□□ -2.55
snR40snR40 FMP42Q04991 504 aa-0.85□□□□□ -2.55
snR40snR40 RPL7BQ12213 244 aaKnown RBP-0.85□□□□□ -2.55
snR40snR40 PMS1P14242 873 aa-0.86□□□□□ -2.55
snR40snR40 COQ3P27680 312 aa-0.86□□□□□ -2.55
snR40snR40 SPR1P32603 445 aa-0.86□□□□□ -2.55
snR40snR40 TYE7P33122 291 aaPredicted RBP-0.86□□□□□ -2.55
snR40snR40 YBR238CP38330 731 aaKnown RBP-0.86□□□□□ -2.55
snR40snR40 YHR097CP38809 366 aaKnown RBP-0.86□□□□□ -2.55
snR40snR40 SAH1P39954 449 aaKnown RBP-0.86□□□□□ -2.55
snR40snR40 YPS6P40583 537 aa-0.86□□□□□ -2.55
snR40snR40 IRC7P43623 340 aa-0.86□□□□□ -2.55
snR40snR40 YKE2P52553 114 aa-0.86□□□□□ -2.55
snR40snR40 MAL11P53048 616 aa-0.86□□□□□ -2.55
snR40snR40 YBP2P53169 641 aa-0.86□□□□□ -2.55
snR40snR40 NGL2Q03264 515 aaKnown RBP-0.86□□□□□ -2.55
snR40snR40 TIF35Q04067 274 aaKnown RBP-0.86□□□□□ -2.55
snR40snR40 TPO3Q06451 622 aa-0.86□□□□□ -2.55
snR40snR40 YER175W-AQ8TGU4 54 aa-0.86□□□□□ -2.55
snR40snR40 YBR259WP38338 688 aa-0.87□□□□□ -2.55
snR40snR40 TOM71P38825 639 aaKnown RBP-0.87□□□□□ -2.55
snR40snR40 GID8P40208 455 aa-0.87□□□□□ -2.55
snR40snR40 YJR039WP47107 1121 aa-0.87□□□□□ -2.55
snR40snR40 YKR011CQ02209 353 aa-0.87□□□□□ -2.55
snR40snR40 SPN1Q06505 410 aaPredicted RBP-0.87□□□□□ -2.55
snR40snR40 MHR1Q06630 226 aa-0.87□□□□□ -2.55
snR40snR40 YDL086WQ07505 273 aa-0.87□□□□□ -2.55
snR40snR40 TMC1Q08422 150 aaPredicted RBP-0.87□□□□□ -2.55
snR40snR40 GPN2Q08726 347 aaPredicted RBP-0.87□□□□□ -2.55
snR40snR40 YKR078WP36158 585 aaKnown RBP-0.88□□□□□ -2.55
snR40snR40 SAK1P38990 1142 aa-0.88□□□□□ -2.55
snR40snR40 ECM1P39715 212 aa-0.88□□□□□ -2.55
snR40snR40 PAL1Q05518 499 aaKnown RBP-0.88□□□□□ -2.55
snR40snR40 RKI1Q12189 258 aa-0.88□□□□□ -2.55
snR40snR40 YMR084WA2P2R3 262 aa-0.89□□□□□ -2.55
snR40snR40 PER1P25625 357 aa-0.89□□□□□ -2.55
snR40snR40 PRO3P32263 286 aaKnown RBP-0.89□□□□□ -2.55
snR40snR40 SEC8P32855 1065 aa-0.89□□□□□ -2.55
snR40snR40 YPT35P38815 214 aaKnown RBP-0.89□□□□□ -2.55
snR40snR40 EXO1P39875 702 aa-0.89□□□□□ -2.55
snR40snR40 YJR061WP40355 935 aa-0.89□□□□□ -2.55
snR40snR40 NIT3P49954 291 aa-0.89□□□□□ -2.55
snR40snR40 HDA1P53973 706 aa-0.89□□□□□ -2.55
snR40snR40 VTC3Q02725 835 aa-0.89□□□□□ -2.55
snR40snR40 PPT2Q12036 173 aa-0.89□□□□□ -2.55
snR40snR40 CDC48P25694 835 aaKnown RBP-0.9□□□□□ -2.55
snR40snR40 SCO2P38072 301 aa-0.9□□□□□ -2.55
snR40snR40 CRP1P38845 465 aaKnown RBP-0.9□□□□□ -2.55
snR40snR40 ACF4P47129 309 aa-0.9□□□□□ -2.55
Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms