RNA–Protein interactions for RNA: YJR001W

AVT1, Transcript of Vacuolar transporter, yeast

Gene AVT1, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AVT1	YJR001W	DUR3	P33413	735 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	MTH1	P35198	433 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	UIP5	P36137	443 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SHM2	P37291	469 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	MCM7	P38132	845 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	PCM1	P38628	557 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	SSZ1	P38788	538 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	RVS167	P39743	482 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	KAP123	P40069	1113 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	TMN3	P40071	706 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	NDC80	P40460	691 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	ALG2	P43636	503 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SPO74	P45819	413 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SLD3	P53135	668 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	MOT3	P54785	490 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	ADA2	Q02336	434 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	TIM50	Q02776	476 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	EAR1	Q03212	550 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	ECM11	Q04110	302 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	ARP9	Q05123	467 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	RTC5	Q12108	567 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	RAV1	P47104	1357 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	BI4	P03879	638 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	INO1	P11986	533 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	MSN1	P22148	382 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	RME1	P32338	300 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	IRE1	P32361	1115 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	CBF2	P32504	956 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	DOM34	P33309	386 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	NUF2	P33895	451 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
AVT1	YJR001W	SEG2	P34250	1132 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	MRPL40	P36534	297 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	LDH1	P38139	375 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	YBR284W	P38150	797 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	RIM11	P38615	370 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	ERC1	P38767	581 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	PAN5	P38787	379 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	DPH1	P40487	425 aa	Known RBP	4.72	□□□□□ -1.65
AVT1	YJR001W	YJL055W	P47044	245 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	VPS53	P47061	822 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	MAD3	P47074	515 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	YGL140C	P53120	1219 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SIW14	P53965	281 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	GUD1	Q07729	489 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SLP1	Q12232	587 aa		4.72	□□□□□ -1.65
AVT1	YJR001W	SWI1	P09547	1314 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	SEM1	O94742	89 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	RAM1	P22007	431 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	PAP1	P29468	568 aa	Known RBP	4.71	□□□□□ -1.66
AVT1	YJR001W	DBF4	P32325	704 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	PTR2	P32901	601 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	RIB7	P33312	244 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	SCD5	P34758	872 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	TAF5	P38129	798 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	YEL068C	P39977	110 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	YJL070C	P40361	888 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	IMA5	P40884	581 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	VTC4	P47075	721 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	LSC1	P53598	329 aa	Known RBP	4.71	□□□□□ -1.66
AVT1	YJR001W	HST1	P53685	503 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	YNL144C	P53907	740 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	VPS9	P54787	451 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	SEC5	P89102	971 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	DPL1	Q05567	589 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	FUS2	Q05670	677 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	ECM38	Q05902	660 aa	Predicted RBP	4.71	□□□□□ -1.66
AVT1	YJR001W	HIM1	Q06674	414 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	PEX15	Q08215	383 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	VHS3	Q08438	674 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	YPL066W	Q12194	479 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	RTC1	Q08281	1341 aa		4.71	□□□□□ -1.66
AVT1	YJR001W	HEM1	P09950	548 aa	Predicted RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	CBP3	P21560	335 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	MSH1	P25846	959 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	ITR1	P30605	584 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	SLA1	P32790	1244 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	DID4	P36108	232 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	TOM71	P38825	639 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	SPC72	P39723	622 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	CCT5	P40413	562 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	CIT3	P43635	486 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	TRF5	P48561	642 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	NUP84	P52891	726 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	UTP22	P53254	1237 aa	Predicted RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	DCP2	P53550	970 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	IST1	P53843	298 aa	Predicted RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	SSL2	Q00578	843 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	ECM9	Q02202	377 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	HAS1	Q03532	505 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	YDR131C	Q03899	556 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	YPL277C	Q08989	487 aa		4.7	□□□□□ -1.66
AVT1	YJR001W	RVB2	Q12464	471 aa	Known RBP	4.7	□□□□□ -1.66
AVT1	YJR001W	YMR084W	A2P2R3	262 aa		4.69	□□□□□ -1.66
AVT1	YJR001W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	not detected
AVT1	YJR001W	KSS1	P14681	368 aa		4.69	□□□□□ -1.66
AVT1	YJR001W	MSD1	P15179	658 aa	Known RBP	4.69	□□□□□ -1.66
AVT1	YJR001W	YKU70	P32807	602 aa		4.69	□□□□□ -1.66
AVT1	YJR001W	MIA40	P36046	403 aa		4.69	□□□□□ -1.66
AVT1	YJR001W	MIC60	P36112	540 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms