RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA4	YHR111W	RPS6A	P0CX37	236 aa	Known RBP	10.85	□□□□□ -0.67
UBA4	YHR111W	RPS6B	P0CX38	236 aa	Predicted RBP	10.85	□□□□□ -0.67
UBA4	YHR111W	XRS2	P33301	854 aa		10.85	□□□□□ -0.67
UBA4	YHR111W	SAP190	P36123	1033 aa		10.85	□□□□□ -0.67
UBA4	YHR111W	SHM1	P37292	490 aa	Predicted RBP	10.85	□□□□□ -0.67
UBA4	YHR111W	NOP4	P37838	685 aa	Known RBP	10.85	□□□□□ -0.67
UBA4	YHR111W	SDS3	P40505	327 aa		10.85	□□□□□ -0.67
UBA4	YHR111W	LSB6	P42951	607 aa		10.85	□□□□□ -0.67
UBA4	YHR111W	LEE1	Q02799	301 aa	Known RBP	10.85	□□□□□ -0.67
UBA4	YHR111W	NSE5	Q03718	556 aa		10.85	□□□□□ -0.67
UBA4	YHR111W	HO	P09932	586 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	RAM1	P22007	431 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	ROX1	P25042	368 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	MSH3	P25336	1018 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	NIP100	P33420	868 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	COY1	P34237	679 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	YKL097C	P34245	136 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	MAP2	P38174	421 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	DSF2	P38213	736 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	SFB3	P38810	929 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	SHQ1	P40486	507 aa	Predicted RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	VPS70	P47161	811 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	YGL036W	P53185	909 aa	Predicted RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	ESBP6	P53918	673 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	YML082W	Q04533	649 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	LRE1	P25579	583 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	SEC65	P29478	273 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	TSA1	P34760	196 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	RKM3	P38222	552 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	DYS1	P38791	387 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	RAD55	P38953	406 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	TFG2	P41896	400 aa	Predicted RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	PSP1	P50896	841 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	HFM1	P51979	1187 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	UTP8	P53276	713 aa	Known RBP	10.84	□□□□□ -0.67
UBA4	YHR111W	IRC10	Q08118	586 aa		10.84	□□□□□ -0.67
UBA4	YHR111W	PUP3	P25451	205 aa	Known RBP	10.83	□□□□□ -0.68
UBA4	YHR111W	SMC1	P32908	1225 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	YKR051W	P36142	418 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	YMC2	P38087	329 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	BTT1	P40314	149 aa	Predicted RBP	10.83	□□□□□ -0.68
UBA4	YHR111W	MND1	P53102	219 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	CEG1	Q01159	459 aa	Predicted RBP	10.83	□□□□□ -0.68
UBA4	YHR111W	YPR078C	Q06813	372 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	TRE1	Q08919	783 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	SAM3	Q08986	587 aa		10.83	□□□□□ -0.68
UBA4	YHR111W	CDC33	P07260	213 aa	Known RBP	10.82	□□□□□ -0.68
UBA4	YHR111W	RAD16	P31244	790 aa		10.82	□□□□□ -0.68
UBA4	YHR111W	GPD1	Q00055	391 aa	Known RBP	10.82	□□□□□ -0.68
UBA4	YHR111W	PPR1	P07272	904 aa	Predicted RBP	10.81	□□□□□ -0.68
UBA4	YHR111W	YER152C	P10356	443 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	MRPL10	P36520	322 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	DUG2	P38149	878 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	GUF1	P46943	645 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	RSC1	P53236	928 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	GCN5	Q03330	439 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	YPQ1	Q12010	308 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	NBP2	Q12163	236 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	NDJ1	Q12366	352 aa		10.81	□□□□□ -0.68
UBA4	YHR111W	TUP1	P16649	713 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	ISF1	P32488	338 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	BCH2	P36122	765 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	TRZ1	P36159	838 aa	Predicted RBP	10.8	□□□□□ -0.68
UBA4	YHR111W	FHL1	P39521	936 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	VFA1	P40080	203 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	IES1	P43579	692 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	PFD1	P46988	109 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	ART5	P53244	586 aa	Known RBP	10.8	□□□□□ -0.68
UBA4	YHR111W	DDC1	Q08949	612 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	VPS54	Q12071	889 aa		10.8	□□□□□ -0.68
UBA4	YHR111W	JIP3	O13555	125 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	RPS3	P05750	240 aa	Known RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	MTF1	P14908	341 aa	Known RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	AVT2	P39981	480 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	CDC1	P40986	491 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	PHO86	P46956	311 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	ASG7	P46993	209 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	TAD1	P53065	400 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	MTD1	Q02046	320 aa	Known RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	ARO80	Q04052	950 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	ECM22	Q05958	814 aa	Predicted RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	BSP1	Q06604	576 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	RCL1	Q08096	367 aa	Predicted RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	YOL098C	Q12496	1037 aa		10.79	□□□□□ -0.68
UBA4	YHR111W	TOR2	P32600	2474 aa	Known RBP	10.79	□□□□□ -0.68
UBA4	YHR111W	STE11	P23561	717 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	SGF29	P25554	259 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	KNS1	P32350	737 aa	Predicted RBP	10.78	□□□□□ -0.68
UBA4	YHR111W	DSS4	P32601	143 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	YBR225W	P38321	900 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	NUP60	P39705	539 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	YEL075C	P39972	122 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	RPT2	P40327	437 aa	Known RBP	10.78	□□□□□ -0.68
UBA4	YHR111W	YLR287C	Q05881	355 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	MDM38	Q08179	573 aa		10.78	□□□□□ -0.68
UBA4	YHR111W	PHO13	P19881	312 aa		10.77	□□□□□ -0.69
UBA4	YHR111W	PPH22	P23595	377 aa		10.77	□□□□□ -0.69
UBA4	YHR111W	SPT5	P27692	1063 aa	Known RBP	10.77	□□□□□ -0.69
UBA4	YHR111W	DAL1	P32375	460 aa		10.77	□□□□□ -0.69
UBA4	YHR111W	POL12	P38121	705 aa	Predicted RBP	10.77	□□□□□ -0.69

Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms