RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W WHI5Q12416 295 aa3.43□□□□□ -1.86
USE1YGL098W SSK22P25390 1331 aaPredicted RBP3.43□□□□□ -1.86
USE1YGL098W PGK1P00560 416 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W LEU1P07264 779 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W MATALPHA2P0CY08 210 aa3.42□□□□□ -1.86
USE1YGL098W HMLALPHA2P0CY09 210 aa3.42□□□□□ -1.86
USE1YGL098W URA4P20051 364 aa3.42□□□□□ -1.86
USE1YGL098W OSM1P21375 501 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W KIN3P22209 435 aa3.42□□□□□ -1.86
USE1YGL098W RET1P22276 1149 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W GSY1P23337 708 aa3.42□□□□□ -1.86
USE1YGL098W PUF4P25339 888 aaKnown RBP RIP-Chip data3.42□□□□□ -1.86not detected
USE1YGL098W APL1P27351 700 aa3.42□□□□□ -1.86
USE1YGL098W BMH1P29311 267 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W MGM1P32266 881 aa3.42□□□□□ -1.86
USE1YGL098W SMY1P32364 656 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W MRE11P32829 692 aa3.42□□□□□ -1.86
USE1YGL098W YBL055CP34220 418 aaPredicted RBP3.42□□□□□ -1.86
USE1YGL098W BMH2P34730 273 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W YKL063CP35725 167 aa3.42□□□□□ -1.86
USE1YGL098W YKR078WP36158 585 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W ECM21P38167 1117 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W MUM2P38236 366 aa3.42□□□□□ -1.86
USE1YGL098W YBR062CP38239 180 aa3.42□□□□□ -1.86
USE1YGL098W RTS1P38903 757 aa3.42□□□□□ -1.86
USE1YGL098W SER3P40054 469 aa3.42□□□□□ -1.86
USE1YGL098W ALG5P40350 334 aa3.42□□□□□ -1.86
USE1YGL098W JEM1P40358 645 aa3.42□□□□□ -1.86
USE1YGL098W SHQ1P40486 507 aaPredicted RBP3.42□□□□□ -1.86
USE1YGL098W IRR1P40541 1150 aa3.42□□□□□ -1.86
USE1YGL098W RLP7P40693 322 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W GCD10P41814 478 aa3.42□□□□□ -1.86
USE1YGL098W TDA10P42938 290 aa3.42□□□□□ -1.86
USE1YGL098W ALG2P43636 503 aa3.42□□□□□ -1.86
USE1YGL098W MET12P46151 657 aa3.42□□□□□ -1.86
USE1YGL098W FMP33P46998 180 aa3.42□□□□□ -1.86
USE1YGL098W PRY1P47032 299 aa3.42□□□□□ -1.86
USE1YGL098W RFX1P48743 811 aa3.42□□□□□ -1.86
USE1YGL098W RNR4P49723 345 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W UBA2P52488 636 aa3.42□□□□□ -1.86
USE1YGL098W MON1P53129 644 aa3.42□□□□□ -1.86
USE1YGL098W CWC25P53854 179 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W FYV6P53913 173 aa3.42□□□□□ -1.86
USE1YGL098W RPM2Q02773 1202 aa3.42□□□□□ -1.86
USE1YGL098W LGE1Q02796 332 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W GDE1Q02979 1223 aa3.42□□□□□ -1.86
USE1YGL098W NGL3Q03210 505 aa3.42□□□□□ -1.86
USE1YGL098W YML020WQ03722 664 aa3.42□□□□□ -1.86
USE1YGL098W HMO1Q03973 246 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W SHE9Q04172 456 aa3.42□□□□□ -1.86
USE1YGL098W DYN3Q04949 312 aa3.42□□□□□ -1.86
USE1YGL098W YDL073WQ07454 984 aa3.42□□□□□ -1.86
USE1YGL098W MEU1Q07938 337 aaKnown RBP RIP-Chip data3.42□□□□□ -1.86not detected
USE1YGL098W YLR031WQ07978 186 aa3.42□□□□□ -1.86
USE1YGL098W YOL057WQ08225 711 aa3.42□□□□□ -1.86
USE1YGL098W AVO1Q08236 1176 aa3.42□□□□□ -1.86
USE1YGL098W OSW1Q08692 278 aa3.42□□□□□ -1.86
USE1YGL098W PCL8Q08966 492 aa3.42□□□□□ -1.86
USE1YGL098W NEW1Q08972 1196 aaKnown RBP3.42□□□□□ -1.86
USE1YGL098W GET4Q12125 312 aa3.42□□□□□ -1.86
USE1YGL098W WTM2Q12206 467 aa3.42□□□□□ -1.86
USE1YGL098W HSP42Q12329 375 aa3.42□□□□□ -1.86
USE1YGL098W RKM4Q12504 494 aa3.42□□□□□ -1.86
USE1YGL098W SEY1Q99287 776 aa3.42□□□□□ -1.86
USE1YGL098W USO1P25386 1790 aa3.42□□□□□ -1.86
USE1YGL098W DNF3Q12674 1656 aa3.42□□□□□ -1.86
USE1YGL098W PDE2P06776 526 aa3.41□□□□□ -1.86
USE1YGL098W RGP1P16664 663 aa3.41□□□□□ -1.86
USE1YGL098W MEF1P25039 761 aa3.41□□□□□ -1.86
USE1YGL098W ILV6P25605 309 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W RPS5P26783 225 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W NAM7P30771 971 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W GCG1P32656 232 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W HCS1P34243 683 aa3.41□□□□□ -1.86
USE1YGL098W VPS21P36017 210 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W TRZ1P36159 838 aaPredicted RBP3.41□□□□□ -1.86
USE1YGL098W SHM1P37292 490 aaPredicted RBP3.41□□□□□ -1.86
USE1YGL098W AKL1P38080 1108 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W YBR287WP38355 427 aa3.41□□□□□ -1.86
USE1YGL098W PEX18P38855 283 aa3.41□□□□□ -1.86
USE1YGL098W SMC2P38989 1170 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W STM1P39015 273 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W DLD3P39976 496 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W IES5P40060 125 aa3.41□□□□□ -1.86
USE1YGL098W FTR1P40088 404 aa3.41□□□□□ -1.86
USE1YGL098W ESL1P40456 1118 aa3.41□□□□□ -1.86
USE1YGL098W SWP82P43554 623 aa3.41□□□□□ -1.86
USE1YGL098W IML2P47031 731 aa3.41□□□□□ -1.86
USE1YGL098W YJL055WP47044 245 aa3.41□□□□□ -1.86
USE1YGL098W SNX4P47057 423 aa3.41□□□□□ -1.86
USE1YGL098W URB2P47108 1174 aa3.41□□□□□ -1.86
USE1YGL098W MLC1P53141 149 aa3.41□□□□□ -1.86
USE1YGL098W SPC105P53148 917 aa3.41□□□□□ -1.86
USE1YGL098W TPO2P53283 614 aa3.41□□□□□ -1.86
USE1YGL098W CNM67P53865 581 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W MEH1Q02205 184 aa3.41□□□□□ -1.86
USE1YGL098W FCP1Q03254 732 aa3.41□□□□□ -1.86
USE1YGL098W ECM11Q04110 302 aa3.41□□□□□ -1.86
USE1YGL098W YMR114CQ04471 368 aaKnown RBP3.41□□□□□ -1.86
USE1YGL098W TAF9Q05027 157 aa3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms