RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	PHM6	Q05637	104 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	RPN7	Q06103	429 aa	Known RBP	4.54	□□□□□ -1.68
UBX5	YDR330W	THI22	Q06490	572 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	YOR022C	Q12204	715 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	YIL177C	P40434	1758 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YJL225C	P40889	1758 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	TRX2	P22803	104 aa	Known RBP	4.53	□□□□□ -1.68
UBX5	YDR330W	PTP2	P29461	750 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	SRP101	P32916	621 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YKL133C	P36066	463 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YKR051W	P36142	418 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	MAL31	P38156	614 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	RIM4	P38741	713 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YFL066C	P43538	392 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	BNA2	P47125	453 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	PSP2	P50109	593 aa	Known RBP	4.53	□□□□□ -1.68
UBX5	YDR330W	FOL2	P51601	243 aa	Known RBP	4.53	□□□□□ -1.68
UBX5	YDR330W	SLD3	P53135	668 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	SPC105	P53148	917 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YGR012W	P53206	393 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	MSC2	Q03455	724 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	SKY1	Q03656	742 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	SIZ1	Q04195	904 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	YDR215C	Q12240	137 aa		4.53	□□□□□ -1.68
UBX5	YDR330W	RPO41	P13433	1351 aa	Known RBP	4.53	□□□□□ -1.68
UBX5	YDR330W	YMR187C	Q03236	431 aa		4.52	□□□□□ -1.69
UBX5	YDR330W	YHM2	Q04013	314 aa		4.52	□□□□□ -1.69
UBX5	YDR330W	YPR027C	Q12079	277 aa		4.52	□□□□□ -1.69
UBX5	YDR330W	YRF1-2	P40105	1681 aa		4.52	□□□□□ -1.69
UBX5	YDR330W	RRP5	Q05022	1729 aa	Known RBP	4.52	□□□□□ -1.69
UBX5	YDR330W	GAL1	P04385	528 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	PGI1	P12709	554 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	COX11	P19516	300 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	ADP1	P25371	1049 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	DAL3	P32459	195 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	PTH2	P34222	208 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	YKR018C	P36114	725 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	POA1	P38218	177 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	ZRG8	P40021	1076 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	YIL108W	P40483	696 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	ZIP2	P53061	704 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	YGR021W	P53212	290 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	HEF3	P53978	1044 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	MLC2	Q06580	163 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	PEX15	Q08215	383 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	THI21	Q08975	551 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	HAL9	Q12180	1030 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	APM4	Q99186	491 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	HEM12	P32347	362 aa	Predicted RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	RPD3	P32561	433 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	FLR1	P38124	548 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	SLN1	P39928	1220 aa	Predicted RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	PCL10	P53124	433 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	SSY1	Q03770	852 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	CDA1	Q06702	301 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	RTT109	Q07794	436 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	HFI1	Q12060	488 aa		4.51	□□□□□ -1.69
UBX5	YDR330W	RRP6	Q12149	733 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	RIB2	Q12362	591 aa	Known RBP	4.51	□□□□□ -1.69
UBX5	YDR330W	KCC4	P25389	1037 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	PGM1	P33401	570 aa	Known RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	ATG19	P35193	415 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	ABZ1	P37254	787 aa	Predicted RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	AKL1	P38080	1108 aa	Known RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	HXT6	P39003	570 aa	Known RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	HXT7	P39004	570 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	RNR4	P49723	345 aa	Known RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	DUS1	P53759	423 aa	Known RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	SSL1	Q04673	461 aa	Predicted RBP	4.5	□□□□□ -1.69
UBX5	YDR330W	YDL121C	Q07541	149 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	YPR053C	Q6Q5F3	151 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	YLR149C	Q99296	730 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	Q0142	Q9ZZW4	58 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	SIR4	P11978	1358 aa		4.5	□□□□□ -1.69
UBX5	YDR330W	URB1	P34241	1764 aa	Known RBP	4.49	□□□□□ -1.69
UBX5	YDR330W	FKS3	Q04952	1785 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	PIF1	P07271	859 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	YCK2	P23292	546 aa	Known RBP	4.49	□□□□□ -1.69
UBX5	YDR330W	SEC65	P29478	273 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	MRS6	P32864	603 aa	Known RBP	4.49	□□□□□ -1.69
UBX5	YDR330W	OAF3	P36023	863 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	MNN4	P36044	1178 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	KAE1	P36132	386 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	YKR075C	P36155	307 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	YIL092W	P40497	633 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	RSC8	P43609	557 aa	Known RBP	4.49	□□□□□ -1.69
UBX5	YDR330W	GPD1	Q00055	391 aa	Known RBP	4.49	□□□□□ -1.69
UBX5	YDR330W	YLR122C	Q12312	125 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	YRF1-4	O13559	1382 aa		4.49	□□□□□ -1.69
UBX5	YDR330W	RPP2A	P05319	106 aa	Known RBP	4.48	□□□□□ -1.69
UBX5	YDR330W	RPS21A	P0C0V8	87 aa	Known RBP	4.48	□□□□□ -1.69
UBX5	YDR330W	HCA4	P20448	770 aa	Known RBP	4.48	□□□□□ -1.69
UBX5	YDR330W	YKU70	P32807	602 aa		4.48	□□□□□ -1.69
UBX5	YDR330W	IES5	P40060	125 aa		4.48	□□□□□ -1.69
UBX5	YDR330W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.48	□□□□□ -1.69	not detected
UBX5	YDR330W	DSD1	P53095	428 aa		4.48	□□□□□ -1.69
UBX5	YDR330W	YNL050C	P53952	270 aa		4.48	□□□□□ -1.69
UBX5	YDR330W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.48	□□□□□ -1.69	not detected
UBX5	YDR330W	DCS2	Q12123	353 aa		4.48	□□□□□ -1.69
UBX5	YDR330W	PHM7	Q12252	991 aa		4.48	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms