RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W NSE5Q03718 556 aa2.35□□□□□ -2.03
SIR4YDR227W RSC2Q06488 889 aa2.35□□□□□ -2.03
SIR4YDR227W YPR196WQ06595 470 aa2.35□□□□□ -2.03
SIR4YDR227W AVL9Q12500 764 aa2.35□□□□□ -2.03
SIR4YDR227W ENA5Q12691 1091 aa2.35□□□□□ -2.03
SIR4YDR227W CBP1P07252 654 aa2.35□□□□□ -2.03
SIR4YDR227W CYC8P14922 966 aa2.35□□□□□ -2.03
SIR4YDR227W HSC82P15108 705 aaKnown RBP2.35□□□□□ -2.03
SIR4YDR227W YSR3P23501 404 aa2.35□□□□□ -2.03
SIR4YDR227W DBP2P24783 546 aaKnown RBP2.35□□□□□ -2.03
SIR4YDR227W SSU1P41930 458 aa2.35□□□□□ -2.03
SIR4YDR227W RNR4P49723 345 aaKnown RBP2.35□□□□□ -2.03
SIR4YDR227W TIM10P87108 93 aa2.35□□□□□ -2.03
SIR4YDR227W NBA1Q08229 501 aaKnown RBP2.35□□□□□ -2.03
SIR4YDR227W TSC13Q99190 310 aa2.35□□□□□ -2.03
SIR4YDR227W PUT4P15380 627 aa2.34□□□□□ -2.03
SIR4YDR227W NUP120P35729 1037 aa2.34□□□□□ -2.03
SIR4YDR227W SPF1P39986 1215 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W YHC3P47040 408 aa2.34□□□□□ -2.03
SIR4YDR227W TAD1P53065 400 aa2.34□□□□□ -2.03
SIR4YDR227W YPR027CQ12079 277 aa2.34□□□□□ -2.03
SIR4YDR227W YOL107WQ12239 342 aa2.34□□□□□ -2.03
SIR4YDR227W IKI3Q06706 1349 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W DIT1P21623 536 aa2.34□□□□□ -2.03
SIR4YDR227W SPT5P27692 1063 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W FBP26P32604 452 aa2.34□□□□□ -2.03
SIR4YDR227W TFB1P32776 642 aa2.34□□□□□ -2.03
SIR4YDR227W VPS17P32913 551 aa2.34□□□□□ -2.03
SIR4YDR227W RPT3P33298 428 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W RTS1P38903 757 aa2.34□□□□□ -2.03
SIR4YDR227W RTT105P40063 208 aa2.34□□□□□ -2.03
SIR4YDR227W PFK26P40433 827 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W VHR1P40522 640 aa2.34□□□□□ -2.03
SIR4YDR227W BPL1P48445 690 aaPredicted RBP2.34□□□□□ -2.03
SIR4YDR227W LCL3P53153 274 aa2.34□□□□□ -2.03
SIR4YDR227W GIM3P53900 129 aa2.34□□□□□ -2.03
SIR4YDR227W CLU1Q03690 1277 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W YMR206WQ03695 313 aa2.34□□□□□ -2.03
SIR4YDR227W HDA3Q06623 655 aa2.34□□□□□ -2.03
SIR4YDR227W UTP4Q06679 776 aaKnown RBP2.34□□□□□ -2.03
SIR4YDR227W GAS4Q08271 471 aa2.34□□□□□ -2.03
SIR4YDR227W TOP3P13099 656 aa2.34□□□□□ -2.04
SIR4YDR227W GAP1P19145 602 aaPredicted RBP2.34□□□□□ -2.04
SIR4YDR227W RDS2P19541 446 aaKnown RBP2.34□□□□□ -2.04
SIR4YDR227W SMY1P32364 656 aaKnown RBP2.34□□□□□ -2.04
SIR4YDR227W IME2P32581 645 aa2.34□□□□□ -2.04
SIR4YDR227W PIM1P36775 1133 aa2.34□□□□□ -2.04
SIR4YDR227W RAD55P38953 406 aa2.34□□□□□ -2.04
SIR4YDR227W MDE1P47095 244 aa2.34□□□□□ -2.04
SIR4YDR227W HMG2P12684 1045 aa2.33□□□□□ -2.04
SIR4YDR227W OSM1P21375 501 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W VBA5P36172 582 aa2.33□□□□□ -2.04
SIR4YDR227W APE4P38821 490 aa2.33□□□□□ -2.04
SIR4YDR227W AIM10P39965 576 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W YGL176CP46945 554 aa2.33□□□□□ -2.04
SIR4YDR227W YJR096WP47137 282 aa2.33□□□□□ -2.04
SIR4YDR227W HOL1P53389 586 aa2.33□□□□□ -2.04
SIR4YDR227W IMP4P53941 290 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W LAP3Q01532 483 aaKnown RBP RIP-Chip data2.33□□□□□ -2.04not detected
SIR4YDR227W RNH1Q04740 348 aa2.33□□□□□ -2.04
SIR4YDR227W RPS6AP0CX37 236 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W RPS6BP0CX38 236 aaPredicted RBP2.33□□□□□ -2.04
SIR4YDR227W YCK2P23292 546 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W RER1P25560 188 aa2.33□□□□□ -2.04
SIR4YDR227W NFU1P32860 256 aa2.33□□□□□ -2.04
SIR4YDR227W RIB7P33312 244 aa2.33□□□□□ -2.04
SIR4YDR227W PSY4P38193 441 aa2.33□□□□□ -2.04
SIR4YDR227W BRE2P43132 505 aa2.33□□□□□ -2.04
SIR4YDR227W GIS3Q12418 502 aa2.33□□□□□ -2.04
SIR4YDR227W NSI1Q12457 570 aa2.33□□□□□ -2.04
SIR4YDR227W HPR1P17629 752 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W MGM1P32266 881 aa2.33□□□□□ -2.04
SIR4YDR227W PUP2P32379 260 aa2.33□□□□□ -2.04
SIR4YDR227W SSE1P32589 693 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W MDL1P33310 695 aa2.33□□□□□ -2.04
SIR4YDR227W SHM1P37292 490 aaPredicted RBP2.33□□□□□ -2.04
SIR4YDR227W MEF2P39677 819 aa2.33□□□□□ -2.04
SIR4YDR227W YGR273CP53329 174 aa2.33□□□□□ -2.04
SIR4YDR227W HST1P53685 503 aa2.33□□□□□ -2.04
SIR4YDR227W YNL050CP53952 270 aa2.33□□□□□ -2.04
SIR4YDR227W GIC2Q06648 383 aa2.33□□□□□ -2.04
SIR4YDR227W VPS54Q12071 889 aa2.33□□□□□ -2.04
SIR4YDR227W FAS2P19097 1887 aaKnown RBP2.33□□□□□ -2.04
SIR4YDR227W CHO2P05374 869 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W PHO4P07270 312 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W BOS1P25385 244 aa2.32□□□□□ -2.04
SIR4YDR227W TGL1P34163 548 aa2.32□□□□□ -2.04
SIR4YDR227W APN2P38207 520 aa2.32□□□□□ -2.04
SIR4YDR227W YFL052WP43551 465 aa2.32□□□□□ -2.04
SIR4YDR227W ELA1P53861 379 aaPredicted RBP2.32□□□□□ -2.04
SIR4YDR227W PRP42Q03776 544 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W TOS4Q06266 489 aa2.32□□□□□ -2.04
SIR4YDR227W PHO92Q06390 306 aa2.32□□□□□ -2.04
SIR4YDR227W FMP45Q07651 309 aa2.32□□□□□ -2.04
SIR4YDR227W GCR1P07261 785 aa2.32□□□□□ -2.04
SIR4YDR227W ACE2P21192 770 aa2.32□□□□□ -2.04
SIR4YDR227W AEP2P22136 580 aa2.32□□□□□ -2.04
SIR4YDR227W CDC48P25694 835 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W MRP4P32902 394 aa2.32□□□□□ -2.04
SIR4YDR227W SKI2P35207 1287 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
Retrieved 100 of 5,963 RNA–protein pairs in 19 ms