RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	RKM2	Q03942	479 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	SNO4	Q04902	237 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	YOR059C	Q08448	450 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	HSP33	Q08914	237 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	HSP32	Q08992	237 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	CEX1	Q12453	761 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	CDC48	P25694	835 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	GCD10	P41814	478 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	SKP2	P42843	763 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	YJR098C	P47139	656 aa		4.75	□□□□□ -1.65
CDC9	YDL164C	HAS1	Q03532	505 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	YDR341C	Q05506	607 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	NGL1	Q08213	363 aa	Known RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	SMF3	Q12078	473 aa	Predicted RBP	4.75	□□□□□ -1.65
CDC9	YDL164C	CDC4	P07834	779 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	RPL19A	P0CX82	189 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	RPL19B	P0CX83	189 aa	Predicted RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	CKA1	P15790	372 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	HCA4	P20448	770 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	MCM3	P24279	971 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	SGF29	P25554	259 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	FUN30	P31380	1131 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	SEC21	P32074	935 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	YKL100C	P34248	587 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	SRP72	P38688	640 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	MSC7	P38694	644 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	ALF1	P53904	254 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	MCH5	Q08777	521 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	SPT7	P35177	1332 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	ADE8	P04161	214 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	CMP2	P14747	604 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	REC107	P21651	314 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	SWI4	P25302	1093 aa	Known RBP	4.74	□□□□□ -1.65
CDC9	YDL164C	SLC1	P33333	303 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	YKL077W	P36081	392 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	YBR287W	P38355	427 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	YJL181W	P46987	611 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	DAM1	P53267	343 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	MRPL13	Q02204	264 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	NSI1	Q12457	570 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	PTC5	Q12511	572 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	YLR149C	Q99296	730 aa		4.74	□□□□□ -1.65
CDC9	YDL164C	RAS1	P01119	309 aa		4.73	□□□□□ -1.65
CDC9	YDL164C	FUM1	P08417	488 aa	Known RBP	4.73	□□□□□ -1.65
CDC9	YDL164C	CAF20	P12962	161 aa	Known RBP	4.73	□□□□□ -1.65
CDC9	YDL164C	THR1	P17423	357 aa	Known RBP	4.73	□□□□□ -1.65
CDC9	YDL164C	MF(ALPHA)2	P32435	120 aa		4.73	□□□□□ -1.65
CDC9	YDL164C	YLF2	P38746	405 aa		4.73	□□□□□ -1.65
CDC9	YDL164C	BRE5	P53741	515 aa	Known RBP	4.73	□□□□□ -1.65
CDC9	YDL164C	MTD1	Q02046	320 aa	Known RBP	4.73	□□□□□ -1.65
CDC9	YDL164C	ADY3	Q07732	790 aa		4.73	□□□□□ -1.65
CDC9	YDL164C	ARG3	P05150	338 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	SUI3	P09064	285 aa	Known RBP	4.72	□□□□□ -1.65
CDC9	YDL164C	SSZ1	P38788	538 aa	Known RBP	4.72	□□□□□ -1.65
CDC9	YDL164C	SHU2	P38957	223 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	GUP1	P53154	560 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	MET32	Q12041	191 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	LEU2	P04173	364 aa	Predicted RBP	4.72	□□□□□ -1.65
CDC9	YDL164C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
CDC9	YDL164C	FRD1	P32614	470 aa	Known RBP	4.72	□□□□□ -1.65
CDC9	YDL164C	YJL068C	P40363	299 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	VID28	P40547	921 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	POL31	P46957	487 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	YJR039W	P47107	1121 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	PTA1	Q01329	785 aa	Predicted RBP	4.72	□□□□□ -1.65
CDC9	YDL164C	EAR1	Q03212	550 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	ARP9	Q05123	467 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	SOG2	Q08817	791 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	NFI1	Q12216	726 aa		4.72	□□□□□ -1.65
CDC9	YDL164C	SRO9	P25567	434 aa	Known RBP	4.71	□□□□□ -1.65
CDC9	YDL164C	CTF13	P35203	478 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	PSD1	P39006	500 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	STL1	P39932	569 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	SPO22	P40511	975 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	CLA4	P48562	842 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	SGF73	P53165	657 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	NGL3	Q03210	505 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	RTN2	Q12443	393 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	KCS1	Q12494	1050 aa		4.71	□□□□□ -1.65
CDC9	YDL164C	TUF1	P02992	437 aa	Known RBP	4.71	□□□□□ -1.66
CDC9	YDL164C	NUC1	P08466	329 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	UGA3	P26370	528 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	NGG1	P32494	702 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	PPQ1	P32945	549 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	YKR018C	P36114	725 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	UGA2	P38067	497 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	PIK1	P39104	1066 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	DJP1	P40564	432 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	MRX6	P48564	524 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	ZIP2	P53061	704 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	NCS2	P53923	493 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC9	YDL164C	NOP15	P53927	220 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC9	YDL164C	SFB2	P53953	876 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	PRO2	P54885	456 aa	Known RBP	4.71	□□□□□ -1.66
CDC9	YDL164C	YDR514C	Q04408	483 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	GRX6	Q12438	231 aa		4.71	□□□□□ -1.66
CDC9	YDL164C	RPP2B	P02400	110 aa	Known RBP	4.7	□□□□□ -1.66
CDC9	YDL164C	PMS1	P14242	873 aa		4.7	□□□□□ -1.66
CDC9	YDL164C	TGL1	P34163	548 aa		4.7	□□□□□ -1.66
CDC9	YDL164C	GIC1	P38785	314 aa		4.7	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms