RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	VPS41	P38959	992 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	ARB1	P40024	610 aa	Known RBP	5.23	□□□□□ -1.57
NUP116	YMR047C	ATG3	P40344	310 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	PEX14	P53112	341 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	EMI2	Q04409	500 aa	Known RBP	5.23	□□□□□ -1.57
NUP116	YMR047C	ARR2	Q06597	130 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	MPC54	Q08550	464 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	YPL277C	Q08989	487 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	YOL087C	Q99247	1116 aa		5.23	□□□□□ -1.57
NUP116	YMR047C	FRS2	P15625	503 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	ISF1	P32488	338 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	CTM1	P38818	585 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	MEP1	P40260	492 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	SVL3	Q03088	825 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	CDC31	P06704	161 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	CAD1	P24813	409 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	SEC21	P32074	935 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	STE5	P32917	917 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	RPN3	P40016	523 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	UBA2	P52488	636 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	PGA2	P53903	129 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	TFC8	Q12308	588 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	SSB1	P11484	613 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	NAM7	P30771	971 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	SSB2	P40150	613 aa	Known RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	RSM25	P40496	264 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	CCM1	P48237	864 aa	Predicted RBP	5.22	□□□□□ -1.57
NUP116	YMR047C	ARK1	P53974	638 aa		5.22	□□□□□ -1.57
NUP116	YMR047C	TOM1	Q03280	3268 aa		5.21	□□□□□ -1.57
NUP116	YMR047C	VMA1	P17255	1071 aa	Known RBP	5.21	□□□□□ -1.58
NUP116	YMR047C	PRX1	P34227	261 aa	Known RBP	5.21	□□□□□ -1.58
NUP116	YMR047C	RFC5	P38251	354 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	BCD1	P38772	366 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	YHR218W	P38899	603 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	TAM41	P53230	385 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	DIP5	P53388	608 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	SML1	Q04964	104 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	YOR022C	Q12204	715 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	PET123	P17558	318 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	RSA4	P25382	515 aa	Known RBP	5.21	□□□□□ -1.58
NUP116	YMR047C	PEP12	P32854	288 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	TIF3	P34167	436 aa	Known RBP	5.21	□□□□□ -1.58
NUP116	YMR047C	YKL023W	P36103	277 aa	Known RBP	5.21	□□□□□ -1.58
NUP116	YMR047C	NDC80	P40460	691 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	MOB1	P40484	314 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	RIM21	P48565	533 aa		5.21	□□□□□ -1.58
NUP116	YMR047C	PFK1	P16861	987 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	PGS1	P25578	521 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	ADK2	P26364	225 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	MCM2	P29469	868 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	PGM2	P37012	569 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	UBP14	P38237	781 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	EXO84	P38261	753 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	FYV8	P46949	817 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	SDA1	P53313	767 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	LEE1	Q02799	301 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	TRS130	Q03660	1102 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	KRE28	Q04431	385 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	YMR111C	Q04461	462 aa	Predicted RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	PMT7	Q06644	662 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	GNT1	Q12096	491 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	DID4	P36108	232 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	RGD1	P38339	666 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	FTR1	P40088	404 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	SHE4	P51534	789 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	HOS3	Q02959	697 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	COG4	Q06096	861 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	TSR3	Q12094	313 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	MED1	Q12321	566 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	HIS4	P00815	799 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	TPK1	P06244	397 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	APD1	P38281	316 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	ORC6	P38826	435 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	PSP1	P50896	841 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	HST1	P53685	503 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	YIG1	Q08956	461 aa		5.2	□□□□□ -1.58
NUP116	YMR047C	DDP1	Q99321	188 aa	Known RBP	5.2	□□□□□ -1.58
NUP116	YMR047C	GAL80	P04387	435 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	STE11	P23561	717 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	SEC66	P33754	206 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	STN1	P38960	494 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	ASN1	P49089	572 aa	Known RBP	5.19	□□□□□ -1.58
NUP116	YMR047C	IST1	P53843	298 aa	Predicted RBP	5.19	□□□□□ -1.58
NUP116	YMR047C	SPP1	Q03012	353 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	YML083C	Q04526	418 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	SLX4	Q12098	748 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	YIL002W-A	Q3E7Z5	69 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	POL4	P25615	582 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	COQ8	P27697	501 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	YKT6	P36015	200 aa	Known RBP	5.19	□□□□□ -1.58
NUP116	YMR047C	PPX1	P38698	397 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	SSZ1	P38788	538 aa	Known RBP	5.19	□□□□□ -1.58
NUP116	YMR047C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	RIP-Chip
NUP116	YMR047C	ALG11	P53954	548 aa	Known RBP	5.19	□□□□□ -1.58
NUP116	YMR047C	YDR461C-A	Q2V2P7	80 aa		5.19	□□□□□ -1.58
NUP116	YMR047C	KGD2	P19262	463 aa	Predicted RBP	5.18	□□□□□ -1.58
NUP116	YMR047C	COX11	P19516	300 aa	Known RBP	5.18	□□□□□ -1.58
NUP116	YMR047C	RRP1	P35178	278 aa	Predicted RBP	5.18	□□□□□ -1.58
NUP116	YMR047C	UTP18	P40362	594 aa	Predicted RBP	5.18	□□□□□ -1.58
NUP116	YMR047C	INP51	P40559	946 aa	Known RBP	5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms