RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W PAN2P53010 1115 aaPredicted RBP3.72□□□□□ -1.81
SEC22YLR268W SCS3P53012 380 aa3.72□□□□□ -1.81
SEC22YLR268W FHN1P53279 174 aa3.72□□□□□ -1.81
SEC22YLR268W ATG4P53867 494 aa3.72□□□□□ -1.81
SEC22YLR268W UBC9P50623 157 aaPredicted RBP3.71□□□□□ -1.82
SEC22YLR268W ERP6P53198 216 aa3.71□□□□□ -1.82
SEC22YLR268W YGR283CP53336 341 aaPredicted RBP3.71□□□□□ -1.82
SEC22YLR268W SPC29P33419 253 aa3.7□□□□□ -1.82
SEC22YLR268W MUP3P38734 546 aa3.7□□□□□ -1.82
SEC22YLR268W SFB3P38810 929 aa3.7□□□□□ -1.82
SEC22YLR268W FMO1P38866 432 aa3.7□□□□□ -1.82
SEC22YLR268W VAC8P39968 578 aa3.7□□□□□ -1.82
SEC22YLR268W GYP8P43570 497 aa3.7□□□□□ -1.82
SEC22YLR268W UBP6P43593 499 aaKnown RBP3.7□□□□□ -1.82
SEC22YLR268W ZIP2P53061 704 aa3.7□□□□□ -1.82
SEC22YLR268W UBX5Q06682 500 aa3.7□□□□□ -1.82
SEC22YLR268W YBR182C-AQ8TGU6 64 aa3.7□□□□□ -1.82
SEC22YLR268W PTP1P25044 335 aa3.69□□□□□ -1.82
SEC22YLR268W RPL8BP29453 256 aaKnown RBP3.69□□□□□ -1.82
SEC22YLR268W MVD1P32377 396 aaKnown RBP3.69□□□□□ -1.82
SEC22YLR268W NUP60P39705 539 aa3.69□□□□□ -1.82
SEC22YLR268W YBP2P53169 641 aa3.69□□□□□ -1.82
SEC22YLR268W MTL1P53214 551 aa3.69□□□□□ -1.82
SEC22YLR268W CTK1Q03957 528 aaKnown RBP3.69□□□□□ -1.82
SEC22YLR268W EAF1Q06337 982 aa3.69□□□□□ -1.82
SEC22YLR268W SPO75Q07798 868 aa3.69□□□□□ -1.82
SEC22YLR268W SLK19Q08581 821 aaKnown RBP3.69□□□□□ -1.82
SEC22YLR268W RGT2Q12300 763 aa3.69□□□□□ -1.82
SEC22YLR268W CCR4P31384 837 aaKnown RBP3.68□□□□□ -1.82
SEC22YLR268W PHO11P35842 467 aa3.68□□□□□ -1.82
SEC22YLR268W PHO12P38693 467 aa3.68□□□□□ -1.82
SEC22YLR268W HRB1P38922 454 aaKnown RBP RIP-Chip data3.68□□□□□ -1.82not detected
SEC22YLR268W LYS9P38999 446 aa3.68□□□□□ -1.82
SEC22YLR268W NET1P47035 1189 aa3.68□□□□□ -1.82
SEC22YLR268W SNU71P53207 620 aaKnown RBP3.68□□□□□ -1.82
SEC22YLR268W ALD6P54115 500 aaKnown RBP3.68□□□□□ -1.82
SEC22YLR268W PGK1P00560 416 aaKnown RBP3.67□□□□□ -1.82
SEC22YLR268W PHR1P05066 565 aaKnown RBP RIP-Chip data3.67□□□□□ -1.82not detected
SEC22YLR268W APL2P36000 726 aaPredicted RBP3.67□□□□□ -1.82
SEC22YLR268W RLP7P40693 322 aaKnown RBP3.67□□□□□ -1.82
SEC22YLR268W PRP31P49704 494 aaPredicted RBP3.67□□□□□ -1.82
SEC22YLR268W ZDS1P50111 915 aaKnown RBP3.67□□□□□ -1.82
SEC22YLR268W YDR514CQ04408 483 aa3.67□□□□□ -1.82
SEC22YLR268W CLF1Q12309 687 aaPredicted RBP3.67□□□□□ -1.82
SEC22YLR268W YHR112CP38716 378 aa3.66□□□□□ -1.82
SEC22YLR268W SHR5P41912 237 aa3.66□□□□□ -1.82
SEC22YLR268W HXT16P47185 567 aa3.66□□□□□ -1.82
SEC22YLR268W NAN1Q02931 896 aaKnown RBP3.66□□□□□ -1.82
SEC22YLR268W ATP25Q03153 612 aa3.66□□□□□ -1.82
SEC22YLR268W MLH3Q12083 715 aa3.66□□□□□ -1.82
SEC22YLR268W WRS1Q12109 432 aaKnown RBP3.66□□□□□ -1.82
SEC22YLR268W YLR149CQ99296 730 aa3.66□□□□□ -1.82
SEC22YLR268W DIF1O13577 133 aa3.65□□□□□ -1.83
SEC22YLR268W THR1P17423 357 aaKnown RBP3.65□□□□□ -1.83
SEC22YLR268W ADE2P21264 571 aaKnown RBP3.65□□□□□ -1.83
SEC22YLR268W ARE1P25628 610 aa3.65□□□□□ -1.83
SEC22YLR268W FUB1P25659 250 aa3.65□□□□□ -1.83
SEC22YLR268W TRZ1P36159 838 aaPredicted RBP3.65□□□□□ -1.83
SEC22YLR268W STB2P46679 850 aa3.65□□□□□ -1.83
SEC22YLR268W MPS1P54199 764 aa3.65□□□□□ -1.83
SEC22YLR268W ARG5,6Q01217 863 aa3.65□□□□□ -1.83
SEC22YLR268W MCM21Q06675 368 aa3.65□□□□□ -1.83
SEC22YLR268W ERG11P10614 530 aa3.64□□□□□ -1.83
SEC22YLR268W GMH1P36125 273 aa3.64□□□□□ -1.83
SEC22YLR268W BPL1P48445 690 aaPredicted RBP3.64□□□□□ -1.83
SEC22YLR268W MET7Q08645 548 aa3.64□□□□□ -1.83
SEC22YLR268W GRX1P25373 110 aaKnown RBP3.63□□□□□ -1.83
SEC22YLR268W APT2P36973 181 aa3.63□□□□□ -1.83
SEC22YLR268W OSH2Q12451 1283 aa3.63□□□□□ -1.83
SEC22YLR268W HRP1Q99383 534 aaKnown RBP3.63□□□□□ -1.83
SEC22YLR268W HSP60P19882 572 aaKnown RBP3.62□□□□□ -1.83
SEC22YLR268W KCC4P25389 1037 aa3.62□□□□□ -1.83
SEC22YLR268W XBP1P40489 647 aa3.62□□□□□ -1.83
SEC22YLR268W ALG2P43636 503 aa3.62□□□□□ -1.83
SEC22YLR268W YDL124WQ07551 312 aaKnown RBP3.62□□□□□ -1.83
SEC22YLR268W CIR2Q08822 631 aa3.62□□□□□ -1.83
SEC22YLR268W USV1Q12132 391 aa3.62□□□□□ -1.83
SEC22YLR268W ZRT2Q12436 422 aa3.62□□□□□ -1.83
SEC22YLR268W RPA135P22138 1203 aaKnown RBP3.61□□□□□ -1.83
SEC22YLR268W TAF8Q03750 510 aa3.61□□□□□ -1.83
SEC22YLR268W HMO1Q03973 246 aaKnown RBP3.61□□□□□ -1.83
SEC22YLR268W SSF2Q12153 453 aaPredicted RBP3.61□□□□□ -1.83
SEC22YLR268W CIT1P00890 479 aa3.6□□□□□ -1.83
SEC22YLR268W TOM70P07213 617 aaKnown RBP3.6□□□□□ -1.83
SEC22YLR268W SAT4P25333 603 aaKnown RBP3.6□□□□□ -1.83
SEC22YLR268W RGT1P32862 1170 aa3.6□□□□□ -1.83
SEC22YLR268W SET3P36124 751 aa3.6□□□□□ -1.83
SEC22YLR268W CRP1P38845 465 aaKnown RBP3.6□□□□□ -1.83
SEC22YLR268W FMP30Q02883 468 aa3.6□□□□□ -1.83
SEC22YLR268W YDR338CQ05497 695 aa3.6□□□□□ -1.83
SEC22YLR268W RGC1Q06108 1083 aaKnown RBP3.6□□□□□ -1.83
SEC22YLR268W ERG6P25087 383 aaKnown RBP3.59□□□□□ -1.83
SEC22YLR268W YMC2P38087 329 aa3.59□□□□□ -1.83
SEC22YLR268W GET2P40056 285 aa3.59□□□□□ -1.83
SEC22YLR268W HUL4P40985 892 aa3.59□□□□□ -1.83
SEC22YLR268W ORC4P54791 529 aa3.59□□□□□ -1.83
SEC22YLR268W BMS1Q08965 1183 aaKnown RBP3.59□□□□□ -1.83
SEC22YLR268W ADE5,7P07244 802 aaKnown RBP3.58□□□□□ -1.84
SEC22YLR268W ABF1P14164 731 aa3.58□□□□□ -1.84
SEC22YLR268W NUP1P20676 1076 aa3.58□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms