RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C GRX1P25373 110 aaKnown RBP2.35□□□□□ -2.03
VPS54YDR027C YCL002CP25565 263 aa2.35□□□□□ -2.03
VPS54YDR027C YBR259WP38338 688 aa2.35□□□□□ -2.03
VPS54YDR027C GAD1Q04792 585 aa2.35□□□□□ -2.03
VPS54YDR027C YAP7Q08182 245 aa2.35□□□□□ -2.03
VPS54YDR027C ICT1Q12385 394 aa2.35□□□□□ -2.03
VPS54YDR027C YOR093CQ12275 1648 aa2.35□□□□□ -2.03
VPS54YDR027C RPO31P04051 1460 aa2.35□□□□□ -2.03
VPS54YDR027C NDC80P40460 691 aa2.35□□□□□ -2.03
VPS54YDR027C SHR5P41912 237 aa2.35□□□□□ -2.03
VPS54YDR027C UBP6P43593 499 aaKnown RBP2.34□□□□□ -2.03
VPS54YDR027C YDR514CQ04408 483 aa2.34□□□□□ -2.03
VPS54YDR027C YDL124WQ07551 312 aaKnown RBP2.34□□□□□ -2.03
VPS54YDR027C THI21Q08975 551 aa2.34□□□□□ -2.03
VPS54YDR027C GLO1P50107 326 aa2.34□□□□□ -2.04
VPS54YDR027C YBP2P53169 641 aa2.34□□□□□ -2.04
VPS54YDR027C YGR283CP53336 341 aaPredicted RBP2.34□□□□□ -2.04
VPS54YDR027C SEC5P89102 971 aa2.34□□□□□ -2.04
VPS54YDR027C TAF3Q12297 353 aa2.34□□□□□ -2.04
VPS54YDR027C RPN13O13563 156 aa2.33□□□□□ -2.04
VPS54YDR027C TOM70P07213 617 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C HSP60P19882 572 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C HIR1P32479 840 aa2.33□□□□□ -2.04
VPS54YDR027C GYP8P43570 497 aa2.33□□□□□ -2.04
VPS54YDR027C SNU71P53207 620 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C TMT1P32643 299 aa2.33□□□□□ -2.04
VPS54YDR027C CCT3P39077 534 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C ARG2P40360 574 aa2.33□□□□□ -2.04
VPS54YDR027C BAP3P41815 604 aa2.33□□□□□ -2.04
VPS54YDR027C CCT7P42943 550 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C ZDS1P50111 915 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C TEX1P53851 422 aaKnown RBP2.33□□□□□ -2.04
VPS54YDR027C SSK2P53599 1579 aa2.32□□□□□ -2.04
VPS54YDR027C ORC2P32833 620 aa2.32□□□□□ -2.04
VPS54YDR027C GLG1P36143 616 aa2.32□□□□□ -2.04
VPS54YDR027C ECM1P39715 212 aa2.32□□□□□ -2.04
VPS54YDR027C YEL020CP39994 560 aa2.32□□□□□ -2.04
VPS54YDR027C HUL4P40985 892 aa2.32□□□□□ -2.04
VPS54YDR027C CTR1P49573 406 aa2.32□□□□□ -2.04
VPS54YDR027C SSF2Q12153 453 aaPredicted RBP2.32□□□□□ -2.04
VPS54YDR027C YKL033W-AQ86ZR7 236 aa2.32□□□□□ -2.04
VPS54YDR027C DIF1O13577 133 aa2.32□□□□□ -2.04
VPS54YDR027C PYC1P11154 1178 aaKnown RBP2.32□□□□□ -2.04
VPS54YDR027C ZIP2P53061 704 aa2.32□□□□□ -2.04
VPS54YDR027C DNF2Q12675 1612 aa2.31□□□□□ -2.04
VPS54YDR027C CIT1P00890 479 aa2.31□□□□□ -2.04
VPS54YDR027C SIR3P06701 978 aa2.31□□□□□ -2.04
VPS54YDR027C RAD4P14736 754 aa2.31□□□□□ -2.04
VPS54YDR027C MVD1P32377 396 aaKnown RBP2.31□□□□□ -2.04
VPS54YDR027C BDH2P39713 417 aa2.31□□□□□ -2.04
VPS54YDR027C RLP7P40693 322 aaKnown RBP2.31□□□□□ -2.04
VPS54YDR027C ALG2P43636 503 aa2.31□□□□□ -2.04
VPS54YDR027C PRP31P49704 494 aaPredicted RBP2.31□□□□□ -2.04
VPS54YDR027C CTK1Q03957 528 aaKnown RBP2.31□□□□□ -2.04
VPS54YDR027C MRI1Q06489 411 aaKnown RBP2.31□□□□□ -2.04
VPS54YDR027C GPR1Q12361 961 aa2.31□□□□□ -2.04
VPS54YDR027C EMP70P32802 667 aa2.31□□□□□ -2.04
VPS54YDR027C SPC29P33419 253 aa2.31□□□□□ -2.04
VPS54YDR027C PAN2P53010 1115 aaPredicted RBP2.31□□□□□ -2.04
VPS54YDR027C YGR125WP53273 1036 aa2.31□□□□□ -2.04
VPS54YDR027C MET7Q08645 548 aa2.31□□□□□ -2.04
VPS54YDR027C YBR182C-AQ8TGU6 64 aa2.31□□□□□ -2.04
VPS54YDR027C SFB3P38810 929 aa2.3□□□□□ -2.04
VPS54YDR027C TIM54P47045 478 aa2.3□□□□□ -2.04
VPS54YDR027C PHR1P05066 565 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04not detected
VPS54YDR027C HOM2P13663 365 aaKnown RBP2.3□□□□□ -2.04
VPS54YDR027C CCR4P31384 837 aaKnown RBP2.3□□□□□ -2.04
VPS54YDR027C APT2P36973 181 aa2.3□□□□□ -2.04
VPS54YDR027C MTL1P53214 551 aa2.3□□□□□ -2.04
VPS54YDR027C ATP25Q03153 612 aa2.3□□□□□ -2.04
VPS54YDR027C TAF8Q03750 510 aa2.3□□□□□ -2.04
VPS54YDR027C UBC9P50623 157 aaPredicted RBP2.29□□□□□ -2.04
VPS54YDR027C SGS1P35187 1447 aa2.29□□□□□ -2.04
VPS54YDR027C FMO1P38866 432 aa2.29□□□□□ -2.04
VPS54YDR027C NUP60P39705 539 aa2.29□□□□□ -2.04
VPS54YDR027C ALY2P47029 1046 aa2.29□□□□□ -2.04
VPS54YDR027C ATG4P53867 494 aa2.29□□□□□ -2.04
VPS54YDR027C ORC4P54791 529 aa2.29□□□□□ -2.04
VPS54YDR027C VPS34P22543 875 aa2.28□□□□□ -2.04
VPS54YDR027C TRZ1P36159 838 aaPredicted RBP2.28□□□□□ -2.04
VPS54YDR027C RIM13Q03792 727 aa2.28□□□□□ -2.04
VPS54YDR027C PER1P25625 357 aa2.28□□□□□ -2.04
VPS54YDR027C PHO11P35842 467 aa2.28□□□□□ -2.04
VPS54YDR027C APL2P36000 726 aaPredicted RBP2.28□□□□□ -2.04
VPS54YDR027C PHO12P38693 467 aa2.28□□□□□ -2.04
VPS54YDR027C FHN1P53279 174 aa2.28□□□□□ -2.04
VPS54YDR027C SEG1Q04279 960 aa2.28□□□□□ -2.04
VPS54YDR027C SLK19Q08581 821 aaKnown RBP2.28□□□□□ -2.04
VPS54YDR027C ATG2P53855 1592 aa2.28□□□□□ -2.05
VPS54YDR027C DRS2P39524 1355 aa2.28□□□□□ -2.05
VPS54YDR027C ADE2P21264 571 aaKnown RBP2.27□□□□□ -2.05
VPS54YDR027C YHR112CP38716 378 aa2.27□□□□□ -2.05
VPS54YDR027C LYS9P38999 446 aa2.27□□□□□ -2.05
VPS54YDR027C PAC2P39937 518 aa2.27□□□□□ -2.05
VPS54YDR027C CLF1Q12309 687 aaPredicted RBP2.27□□□□□ -2.05
VPS54YDR027C RKR1Q04781 1562 aa2.27□□□□□ -2.05
VPS54YDR027C BET3P36149 193 aa2.27□□□□□ -2.05
VPS54YDR027C HRB1P38922 454 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
VPS54YDR027C HXT16P47185 567 aa2.27□□□□□ -2.05
VPS54YDR027C MRK1P50873 501 aa2.27□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms