RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W HUL4P40985 892 aa4.4□□□□□ -1.71
UPF3YGR072W ADY4Q05955 493 aa4.4□□□□□ -1.71
UPF3YGR072W PHO8P11491 566 aa4.39□□□□□ -1.71
UPF3YGR072W CAF20P12962 161 aaKnown RBP4.39□□□□□ -1.71
UPF3YGR072W PRP9P19736 530 aaKnown RBP4.39□□□□□ -1.71
UPF3YGR072W ARE1P25628 610 aa4.39□□□□□ -1.71
UPF3YGR072W TYE7P33122 291 aaPredicted RBP4.39□□□□□ -1.71
UPF3YGR072W YKR011CQ02209 353 aa4.39□□□□□ -1.71
UPF3YGR072W IOC4Q04213 475 aa4.39□□□□□ -1.71
UPF3YGR072W EAF1Q06337 982 aa4.39□□□□□ -1.71
UPF3YGR072W CIT1P00890 479 aa4.38□□□□□ -1.71
UPF3YGR072W TUB1P09733 447 aaKnown RBP4.38□□□□□ -1.71
UPF3YGR072W GFA1P14742 717 aaKnown RBP4.38□□□□□ -1.71
UPF3YGR072W RFA1P22336 621 aaKnown RBP4.38□□□□□ -1.71
UPF3YGR072W RPL8BP29453 256 aaKnown RBP4.38□□□□□ -1.71
UPF3YGR072W ERT1P38140 529 aa4.38□□□□□ -1.71
UPF3YGR072W RSP5P39940 809 aaKnown RBP4.38□□□□□ -1.71
UPF3YGR072W CEP3P40969 608 aa4.38□□□□□ -1.71
UPF3YGR072W FKH2P41813 862 aa4.38□□□□□ -1.71
UPF3YGR072W TAH11P47112 604 aa4.38□□□□□ -1.71
UPF3YGR072W CCM1P48237 864 aaPredicted RBP4.38□□□□□ -1.71
UPF3YGR072W TPO2P53283 614 aa4.38□□□□□ -1.71
UPF3YGR072W FMP25Q08023 583 aa4.38□□□□□ -1.71
UPF3YGR072W YNL162W-AQ3E7A8 72 aa4.38□□□□□ -1.71
UPF3YGR072W THI4P32318 326 aa4.37□□□□□ -1.71
UPF3YGR072W YHR020WP38708 688 aaKnown RBP4.37□□□□□ -1.71
UPF3YGR072W RPP1P38786 293 aa4.37□□□□□ -1.71
UPF3YGR072W YGL081WP53156 320 aa4.37□□□□□ -1.71
UPF3YGR072W MRPS35P53292 345 aa4.37□□□□□ -1.71
UPF3YGR072W HDA1P53973 706 aa4.37□□□□□ -1.71
UPF3YGR072W BUL2Q03758 920 aaKnown RBP4.37□□□□□ -1.71
UPF3YGR072W YGR161W-CQ3E744 92 aa4.37□□□□□ -1.71
UPF3YGR072W PRP4P20053 465 aaKnown RBP4.36□□□□□ -1.71
UPF3YGR072W URA1P28272 314 aaPredicted RBP4.36□□□□□ -1.71
UPF3YGR072W CDC11P32458 415 aa4.36□□□□□ -1.71
UPF3YGR072W TMT1P32643 299 aa4.36□□□□□ -1.71
UPF3YGR072W TIM23P32897 222 aa4.36□□□□□ -1.71
UPF3YGR072W STE5P32917 917 aa4.36□□□□□ -1.71
UPF3YGR072W YHR078WP38799 552 aa4.36□□□□□ -1.71
UPF3YGR072W MNN1P39106 762 aa4.36□□□□□ -1.71
UPF3YGR072W MUP1P50276 574 aa4.36□□□□□ -1.71
UPF3YGR072W VPS73P53142 486 aaKnown RBP4.36□□□□□ -1.71
UPF3YGR072W UTP8P53276 713 aaKnown RBP4.36□□□□□ -1.71
UPF3YGR072W YDL124WQ07551 312 aaKnown RBP4.36□□□□□ -1.71
UPF3YGR072W CAN1P04817 590 aa4.35□□□□□ -1.71
UPF3YGR072W TOK1P40310 691 aa4.35□□□□□ -1.71
UPF3YGR072W ALR2P43553 858 aa4.35□□□□□ -1.71
UPF3YGR072W LCD1Q04377 747 aa4.35□□□□□ -1.71
UPF3YGR072W YBR053CP38235 358 aa4.34□□□□□ -1.71
UPF3YGR072W THI7Q05998 598 aa4.34□□□□□ -1.71
UPF3YGR072W HBS1P32769 611 aaKnown RBP4.33□□□□□ -1.72
UPF3YGR072W VHR1P40522 640 aa4.33□□□□□ -1.72
UPF3YGR072W PFD1P46988 109 aa4.33□□□□□ -1.72
UPF3YGR072W YJL163CP46996 555 aa4.33□□□□□ -1.72
UPF3YGR072W ASI2P53895 289 aa4.33□□□□□ -1.72
UPF3YGR072W CRR1Q05790 422 aa4.33□□□□□ -1.72
UPF3YGR072W RPS9AO13516 197 aaKnown RBP4.32□□□□□ -1.72
UPF3YGR072W HCA4P20448 770 aaKnown RBP4.32□□□□□ -1.72
UPF3YGR072W REC104P33323 182 aa4.32□□□□□ -1.72
UPF3YGR072W PCL5P38794 229 aa4.32□□□□□ -1.72
UPF3YGR072W AMA1P50082 593 aa4.32□□□□□ -1.72
UPF3YGR072W TAF8Q03750 510 aa4.32□□□□□ -1.72
UPF3YGR072W ARO10Q06408 635 aa4.32□□□□□ -1.72
UPF3YGR072W UBX5Q06682 500 aa4.32□□□□□ -1.72
UPF3YGR072W TSR4P25040 408 aa4.31□□□□□ -1.72
UPF3YGR072W SFP1P32432 683 aa4.31□□□□□ -1.72
UPF3YGR072W JSN1P47135 1091 aaKnown RBP RIP-Chip data4.31□□□□□ -1.72not detected
UPF3YGR072W GLO1P50107 326 aa4.31□□□□□ -1.72
UPF3YGR072W PUS2P53167 370 aa4.31□□□□□ -1.72
UPF3YGR072W RIA1P53893 1110 aa4.31□□□□□ -1.72
UPF3YGR072W PKH1Q03407 766 aa4.31□□□□□ -1.72
UPF3YGR072W ERR1P0CX10 437 aa4.3□□□□□ -1.72
UPF3YGR072W ERR2P0CX11 437 aa4.3□□□□□ -1.72
UPF3YGR072W ILV6P25605 309 aaKnown RBP4.3□□□□□ -1.72
UPF3YGR072W UGO1Q03327 502 aa4.3□□□□□ -1.72
UPF3YGR072W NOP14Q99207 810 aaKnown RBP4.3□□□□□ -1.72
UPF3YGR072W MPH2P0CD99 609 aa4.29□□□□□ -1.72
UPF3YGR072W CDC43P18898 376 aa4.29□□□□□ -1.72
UPF3YGR072W MSH2P25847 964 aa4.29□□□□□ -1.72
UPF3YGR072W HSV2P50079 448 aaPredicted RBP4.29□□□□□ -1.72
UPF3YGR072W DUS1P53759 423 aaKnown RBP4.29□□□□□ -1.72
UPF3YGR072W IRC13Q08630 104 aa4.29□□□□□ -1.72
UPF3YGR072W HAL9Q12180 1030 aa4.29□□□□□ -1.72
UPF3YGR072W TOM70P07213 617 aaKnown RBP4.28□□□□□ -1.72
UPF3YGR072W KIN3P22209 435 aa4.28□□□□□ -1.72
UPF3YGR072W YJR142WP47173 342 aa4.28□□□□□ -1.72
UPF3YGR072W SEC5P89102 971 aa4.28□□□□□ -1.72
UPF3YGR072W YPR071WQ12346 211 aa4.28□□□□□ -1.72
UPF3YGR072W HBN1Q96VH4 193 aa4.28□□□□□ -1.72
UPF3YGR072W GSY1P23337 708 aa4.27□□□□□ -1.73
UPF3YGR072W ADY2P25613 283 aa4.27□□□□□ -1.73
UPF3YGR072W NGG1P32494 702 aa4.27□□□□□ -1.73
UPF3YGR072W PEX6P33760 1030 aa4.27□□□□□ -1.73
UPF3YGR072W TOM20P35180 183 aa4.27□□□□□ -1.73
UPF3YGR072W YBR284WP38150 797 aa4.27□□□□□ -1.73
UPF3YGR072W CRP1P38845 465 aaKnown RBP4.27□□□□□ -1.73
UPF3YGR072W PZF1P39933 429 aa4.27□□□□□ -1.73
UPF3YGR072W YIL166CP40445 542 aa4.27□□□□□ -1.73
UPF3YGR072W YIR042CP40586 236 aa4.27□□□□□ -1.73
UPF3YGR072W RTA1P53047 317 aa4.27□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 17.9 ms