RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C VAC8P39968 578 aa2.42□□□□□ -2.02
VPS54YDR027C SPF1P39986 1215 aaKnown RBP2.42□□□□□ -2.02
VPS54YDR027C YIR042CP40586 236 aa2.42□□□□□ -2.02
VPS54YDR027C ALR2P43553 858 aa2.42□□□□□ -2.02
VPS54YDR027C DUS1P53759 423 aaKnown RBP2.42□□□□□ -2.02
VPS54YDR027C SUT2Q12286 268 aa2.42□□□□□ -2.02
VPS54YDR027C BNR1P40450 1375 aa2.41□□□□□ -2.02
VPS54YDR027C YBR284WP38150 797 aa2.41□□□□□ -2.02
VPS54YDR027C YBR184WP38299 523 aa2.41□□□□□ -2.02
VPS54YDR027C TAH11P47112 604 aa2.41□□□□□ -2.02
VPS54YDR027C NIT3P49954 291 aa2.41□□□□□ -2.02
VPS54YDR027C VPS73P53142 486 aaKnown RBP2.41□□□□□ -2.02
VPS54YDR027C IMO32P53219 342 aa2.41□□□□□ -2.02
VPS54YDR027C MET6P05694 767 aaKnown RBP2.41□□□□□ -2.02
VPS54YDR027C CYS3P31373 394 aaKnown RBP2.41□□□□□ -2.02
VPS54YDR027C STE5P32917 917 aa2.41□□□□□ -2.02
VPS54YDR027C RIX1P38883 763 aaPredicted RBP2.41□□□□□ -2.02
VPS54YDR027C NOG2P53742 486 aaKnown RBP2.41□□□□□ -2.02
VPS54YDR027C HIR3P47171 1648 aa2.4□□□□□ -2.02
VPS54YDR027C ILV6P25605 309 aaKnown RBP2.4□□□□□ -2.02
VPS54YDR027C HIS7P33734 552 aaKnown RBP2.4□□□□□ -2.02
VPS54YDR027C CBR1P38626 284 aaKnown RBP2.4□□□□□ -2.02
VPS54YDR027C SAK1P38990 1142 aa2.4□□□□□ -2.02
VPS54YDR027C YIL166CP40445 542 aa2.4□□□□□ -2.02
VPS54YDR027C HSV2P50079 448 aaPredicted RBP2.4□□□□□ -2.02
VPS54YDR027C ALD6P54115 500 aaKnown RBP2.4□□□□□ -2.02
VPS54YDR027C IRC13Q08630 104 aa2.4□□□□□ -2.02
VPS54YDR027C HAL9Q12180 1030 aa2.4□□□□□ -2.02
VPS54YDR027C RPA190P10964 1664 aaKnown RBP2.4□□□□□ -2.02
VPS54YDR027C YLR415CO13578 112 aa2.4□□□□□ -2.03
VPS54YDR027C DMC1P25453 334 aa2.4□□□□□ -2.03
VPS54YDR027C SSY5P47002 699 aa2.4□□□□□ -2.03
VPS54YDR027C MUS81Q04149 632 aaPredicted RBP2.4□□□□□ -2.03
VPS54YDR027C HOF1Q05080 669 aa2.4□□□□□ -2.03
VPS54YDR027C COQ11Q05892 277 aa2.4□□□□□ -2.03
VPS54YDR027C ENV7Q12003 364 aa2.4□□□□□ -2.03
VPS54YDR027C YOR022CQ12204 715 aa2.4□□□□□ -2.03
VPS54YDR027C YCF1P39109 1515 aaKnown RBP2.39□□□□□ -2.03
VPS54YDR027C PRC1P00729 532 aa2.39□□□□□ -2.03
VPS54YDR027C SSL2Q00578 843 aa2.39□□□□□ -2.03
VPS54YDR027C FMP25Q08023 583 aa2.39□□□□□ -2.03
VPS54YDR027C SGO1Q08490 590 aa2.39□□□□□ -2.03
VPS54YDR027C AFT2Q08957 416 aa2.39□□□□□ -2.03
VPS54YDR027C YNL162W-AQ3E7A8 72 aa2.39□□□□□ -2.03
VPS54YDR027C MET5P47169 1442 aa2.39□□□□□ -2.03
VPS54YDR027C MMS1Q06211 1407 aa2.39□□□□□ -2.03
VPS54YDR027C CDC25P04821 1589 aa2.39□□□□□ -2.03
VPS54YDR027C LAT1P12695 482 aaKnown RBP2.39□□□□□ -2.03
VPS54YDR027C DAL7P21826 554 aa2.39□□□□□ -2.03
VPS54YDR027C SAP190P36123 1033 aa2.39□□□□□ -2.03
VPS54YDR027C PET10P36139 283 aa2.39□□□□□ -2.03
VPS54YDR027C PFD1P46988 109 aa2.39□□□□□ -2.03
VPS54YDR027C DAM1P53267 343 aa2.39□□□□□ -2.03
VPS54YDR027C UTP8P53276 713 aaKnown RBP2.39□□□□□ -2.03
VPS54YDR027C RSC3Q06639 885 aa2.39□□□□□ -2.03
VPS54YDR027C MSD1P15179 658 aaKnown RBP2.38□□□□□ -2.03
VPS54YDR027C PFA3P42836 336 aa2.38□□□□□ -2.03
VPS54YDR027C MDM10P18409 493 aa2.38□□□□□ -2.03
VPS54YDR027C GGA2P38817 585 aaKnown RBP2.38□□□□□ -2.03
VPS54YDR027C FMP52P40008 231 aa2.38□□□□□ -2.03
VPS54YDR027C ERP6P53198 216 aa2.38□□□□□ -2.03
VPS54YDR027C EAF1Q06337 982 aa2.38□□□□□ -2.03
VPS54YDR027C UBX5Q06682 500 aa2.38□□□□□ -2.03
VPS54YDR027C SPO75Q07798 868 aa2.38□□□□□ -2.03
VPS54YDR027C TEL2P53038 688 aa2.37□□□□□ -2.03
VPS54YDR027C ARO10Q06408 635 aa2.37□□□□□ -2.03
VPS54YDR027C TGL5Q12043 749 aa2.37□□□□□ -2.03
VPS54YDR027C HBN1Q96VH4 193 aa2.37□□□□□ -2.03
VPS54YDR027C SPT6P23615 1451 aaKnown RBP2.37□□□□□ -2.03
VPS54YDR027C TAF2P23255 1407 aa2.37□□□□□ -2.03
VPS54YDR027C GEA2P39993 1459 aaKnown RBP2.37□□□□□ -2.03
VPS54YDR027C SPO11P23179 398 aa2.37□□□□□ -2.03
VPS54YDR027C BCD1P38772 366 aa2.37□□□□□ -2.03
VPS54YDR027C TAD1P53065 400 aa2.37□□□□□ -2.03
VPS54YDR027C APM1Q00776 475 aaPredicted RBP2.37□□□□□ -2.03
VPS54YDR027C ATG11Q12527 1178 aa2.37□□□□□ -2.03
VPS54YDR027C ESC1Q03661 1658 aaKnown RBP2.37□□□□□ -2.03
VPS54YDR027C TOP3P13099 656 aa2.36□□□□□ -2.03
VPS54YDR027C ADY2P25613 283 aa2.36□□□□□ -2.03
VPS54YDR027C ARE1P25628 610 aa2.36□□□□□ -2.03
VPS54YDR027C FLO10P36170 1169 aa2.36□□□□□ -2.03
VPS54YDR027C YJL206CP39529 758 aa2.36□□□□□ -2.03
VPS54YDR027C HSL1P34244 1518 aa2.36□□□□□ -2.03
VPS54YDR027C RPL8BP29453 256 aaKnown RBP2.36□□□□□ -2.03
VPS54YDR027C SIC1P38634 284 aa2.36□□□□□ -2.03
VPS54YDR027C MTR3P48240 250 aaPredicted RBP2.36□□□□□ -2.03
VPS54YDR027C YAP1802P53309 568 aa2.36□□□□□ -2.03
VPS54YDR027C NAN1Q02931 896 aaKnown RBP2.36□□□□□ -2.03
VPS54YDR027C THI7Q05998 598 aa2.36□□□□□ -2.03
VPS54YDR027C OSH2Q12451 1283 aa2.36□□□□□ -2.03
VPS54YDR027C EMC3P36039 253 aa2.35□□□□□ -2.03
VPS54YDR027C SET5P38890 526 aaKnown RBP2.35□□□□□ -2.03
VPS54YDR027C REV7P38927 245 aa2.35□□□□□ -2.03
VPS54YDR027C HOS4P40480 1083 aa2.35□□□□□ -2.03
VPS54YDR027C UBC11P52492 156 aa2.35□□□□□ -2.03
VPS54YDR027C SMX3P54999 86 aaPredicted RBP2.35□□□□□ -2.03
VPS54YDR027C LRS4Q04087 347 aaKnown RBP2.35□□□□□ -2.03
VPS54YDR027C ASM4Q05166 528 aa2.35□□□□□ -2.03
VPS54YDR027C REH1Q06709 432 aa2.35□□□□□ -2.03
VPS54YDR027C WRS1Q12109 432 aaKnown RBP2.35□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 83.6 ms