RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	RSC3	Q06639	885 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	IRC10	Q08118	586 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	PRP4	P20053	465 aa	Known RBP	4.23	□□□□□ -1.73
ASM4	YDL088C	EMC3	P36039	253 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	SPC42	P36094	363 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	NRG1	Q03125	231 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	YDR514C	Q04408	483 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	ADY4	Q05955	493 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	FLC1	Q08967	793 aa		4.23	□□□□□ -1.73
ASM4	YDL088C	YCL002C	P25565	263 aa		4.22	□□□□□ -1.73
ASM4	YDL088C	MTH1	P35198	433 aa		4.22	□□□□□ -1.73
ASM4	YDL088C	YHL017W	P38745	532 aa		4.22	□□□□□ -1.73
ASM4	YDL088C	MRPS35	P53292	345 aa		4.22	□□□□□ -1.73
ASM4	YDL088C	LRS4	Q04087	347 aa	Known RBP	4.22	□□□□□ -1.73
ASM4	YDL088C	MUS81	Q04149	632 aa	Predicted RBP	4.22	□□□□□ -1.73
ASM4	YDL088C	SHR5	P41912	237 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	QRI1	P43123	477 aa	Known RBP	4.21	□□□□□ -1.74
ASM4	YDL088C	GYP8	P43570	497 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	YJL049W	P47048	450 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	AMA1	P50082	593 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	YGR283C	P53336	341 aa	Predicted RBP	4.21	□□□□□ -1.74
ASM4	YDL088C	TAF8	Q03750	510 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	REH1	Q06709	432 aa		4.21	□□□□□ -1.74
ASM4	YDL088C	YLR415C	O13578	112 aa		4.2	□□□□□ -1.74
ASM4	YDL088C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
ASM4	YDL088C	SET5	P38890	526 aa	Known RBP	4.2	□□□□□ -1.74
ASM4	YDL088C	ALG2	P43636	503 aa		4.2	□□□□□ -1.74
ASM4	YDL088C	PFA3	P42836	336 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	HUL5	P53119	910 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	PCL5	P38794	229 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	GGA2	P38817	585 aa	Known RBP	4.19	□□□□□ -1.74
ASM4	YDL088C	SDS3	P40505	327 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	YIR042C	P40586	236 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	YJL163C	P46996	555 aa		4.19	□□□□□ -1.74
ASM4	YDL088C	MTR3	P48240	250 aa	Predicted RBP	4.19	□□□□□ -1.74
ASM4	YDL088C	HIS7	P33734	552 aa	Known RBP	4.18	□□□□□ -1.74
ASM4	YDL088C	BET3	P36149	193 aa		4.18	□□□□□ -1.74
ASM4	YDL088C	YBR053C	P38235	358 aa		4.18	□□□□□ -1.74
ASM4	YDL088C	YHR020W	P38708	688 aa	Known RBP	4.18	□□□□□ -1.74
ASM4	YDL088C	RSP5	P39940	809 aa	Known RBP	4.18	□□□□□ -1.74
ASM4	YDL088C	ZDS1	P50111	915 aa	Known RBP	4.18	□□□□□ -1.74
ASM4	YDL088C	MET7	Q08645	548 aa		4.18	□□□□□ -1.74
ASM4	YDL088C	DIF1	O13577	133 aa		4.17	□□□□□ -1.74
ASM4	YDL088C	GAL11	P19659	1081 aa		4.17	□□□□□ -1.74
ASM4	YDL088C	MRH1	Q12117	320 aa	Predicted RBP	4.17	□□□□□ -1.74
ASM4	YDL088C	CAN1	P04817	590 aa		4.16	□□□□□ -1.74
ASM4	YDL088C	CDC43	P18898	376 aa		4.16	□□□□□ -1.74
ASM4	YDL088C	ATF1	P40353	525 aa		4.16	□□□□□ -1.74
ASM4	YDL088C	RLP7	P40693	322 aa	Known RBP	4.16	□□□□□ -1.74
ASM4	YDL088C	HSV2	P50079	448 aa	Predicted RBP	4.16	□□□□□ -1.74
ASM4	YDL088C	RIA1	P53893	1110 aa		4.16	□□□□□ -1.74
ASM4	YDL088C	LGE1	Q02796	332 aa	Known RBP	4.16	□□□□□ -1.74
ASM4	YDL088C	IRC13	Q08630	104 aa		4.16	□□□□□ -1.74
ASM4	YDL088C	PER1	P25625	357 aa		4.15	□□□□□ -1.74
ASM4	YDL088C	RTA1	P53047	317 aa		4.15	□□□□□ -1.74
ASM4	YDL088C	THI21	Q08975	551 aa		4.15	□□□□□ -1.74
ASM4	YDL088C	CDC53	Q12018	815 aa	Known RBP	4.15	□□□□□ -1.74
ASM4	YDL088C	TGL5	Q12043	749 aa		4.15	□□□□□ -1.74
ASM4	YDL088C	LAT1	P12695	482 aa	Known RBP	4.14	□□□□□ -1.75
ASM4	YDL088C	GFA1	P14742	717 aa	Known RBP	4.14	□□□□□ -1.75
ASM4	YDL088C	CBR1	P38626	284 aa	Known RBP	4.14	□□□□□ -1.75
ASM4	YDL088C	ALY2	P47029	1046 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	YBP2	P53169	641 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	ATP25	Q03153	612 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	YBR182C-A	Q8TGU6	64 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	SPC29	P33419	253 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	CUE2	P36075	443 aa	Known RBP	4.14	□□□□□ -1.75
ASM4	YDL088C	YBR259W	P38338	688 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	ZIP2	P53061	704 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	BDF2	Q07442	638 aa		4.14	□□□□□ -1.75
ASM4	YDL088C	KIN3	P22209	435 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	TDP1	P38319	544 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	SIC1	P38634	284 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	SSL2	Q00578	843 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	GAD1	Q04792	585 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	ASM4	Q05166	528 aa		4.13	□□□□□ -1.75
ASM4	YDL088C	HCA4	P20448	770 aa	Known RBP	4.12	□□□□□ -1.75
ASM4	YDL088C	BCD1	P38772	366 aa		4.12	□□□□□ -1.75
ASM4	YDL088C	FMP52	P40008	231 aa		4.12	□□□□□ -1.75
ASM4	YDL088C	SGO1	Q08490	590 aa		4.12	□□□□□ -1.75
ASM4	YDL088C	YOR131C	Q12486	218 aa		4.12	□□□□□ -1.75
ASM4	YDL088C	PEX2	P32800	271 aa		4.11	□□□□□ -1.75
ASM4	YDL088C	ATG11	Q12527	1178 aa		4.11	□□□□□ -1.75
ASM4	YDL088C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
ASM4	YDL088C	PPZ2	P33329	710 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	REV7	P38927	245 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	HOS4	P40480	1083 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	NNF1	P47149	201 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	NSE3	Q05541	303 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	RIP-Chip
ASM4	YDL088C	YFL052W	P43551	465 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	HXT16	P47185	567 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	PRP31	P49704	494 aa	Predicted RBP	4.1	□□□□□ -1.75
ASM4	YDL088C	UBC11	P52492	156 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	TEL2	P53038	688 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	GPR1	Q12361	961 aa		4.1	□□□□□ -1.75
ASM4	YDL088C	VPS73	P53142	486 aa	Known RBP	4.09	□□□□□ -1.75
ASM4	YDL088C	TEX1	P53851	422 aa	Known RBP	4.09	□□□□□ -1.75
ASM4	YDL088C	ORC4	P54791	529 aa		4.09	□□□□□ -1.75
ASM4	YDL088C	MET6	P05694	767 aa	Known RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms