RNA–Protein interactions for RNA: YDR337W

MRPS28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene MRPS28, Length 861 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MRPS28	YDR337W	YLR297W	Q05899	129 aa		7.32	□□□□□ -1.24
MRPS28	YDR337W	RLP24	Q07915	199 aa	Known RBP	7.32	□□□□□ -1.24
MRPS28	YDR337W	IES4	Q08561	116 aa		7.32	□□□□□ -1.24
MRPS28	YDR337W	MTF2	P10849	440 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	TUP1	P16649	713 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	PET123	P17558	318 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	DBP1	P24784	617 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	RME1	P32338	300 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	MUD1	P32605	298 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	KTR2	P33550	425 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	KSP1	P38691	1029 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	SMC2	P38989	1170 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	SHQ1	P40486	507 aa	Predicted RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	APT1	P49435	187 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	HSH155	P49955	971 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	DUS1	P53759	423 aa	Known RBP	7.31	□□□□□ -1.24
MRPS28	YDR337W	ALF1	P53904	254 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	7.31	□□□□□ -1.24	not detected
MRPS28	YDR337W	VTC3	Q02725	835 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	SLX4	Q12098	748 aa		7.31	□□□□□ -1.24
MRPS28	YDR337W	KIN82	P25341	720 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	EFT1	P32324	842 aa	Known RBP	7.3	□□□□□ -1.24
MRPS28	YDR337W	STO1	P34160	861 aa	Known RBP	7.3	□□□□□ -1.24
MRPS28	YDR337W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	7.3	□□□□□ -1.24	not detected
MRPS28	YDR337W	CAJ1	P39101	391 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	SEC9	P40357	651 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	SKP2	P42843	763 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	COS5	P47187	383 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	TPO2	P53283	614 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	BRE5	P53741	515 aa	Known RBP	7.3	□□□□□ -1.24
MRPS28	YDR337W	YNL146W	P53906	100 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	ERG5	P54781	538 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	UTP5	Q04177	643 aa	Known RBP	7.3	□□□□□ -1.24
MRPS28	YDR337W	OPY2	Q06810	360 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	YPR078C	Q06813	372 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	NEW1	Q08972	1196 aa	Known RBP	7.3	□□□□□ -1.24
MRPS28	YDR337W	SRF1	Q12516	437 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	MYO1	P08964	1928 aa		7.3	□□□□□ -1.24
MRPS28	YDR337W	JNM1	P36224	373 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	CCC2	P38995	1004 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	PSF2	P40359	213 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	MMM1	P41800	426 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	SAD1	P43589	448 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	SMC3	P47037	1230 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	YJR107W	P47145	328 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	ORC5	P50874	479 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	TAD1	P53065	400 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	MSC2	Q03455	724 aa		7.29	□□□□□ -1.24
MRPS28	YDR337W	CEF1	Q03654	590 aa	Predicted RBP	7.29	□□□□□ -1.24
MRPS28	YDR337W	CDC53	Q12018	815 aa	Known RBP	7.29	□□□□□ -1.24
MRPS28	YDR337W	TOM70	P07213	617 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	BCS1	P32839	456 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	SMY2	P32909	740 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	GUA1	P38625	525 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	YMR124W	P39523	943 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	FIG4	P42837	879 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	NCS6	P53088	359 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	CUL3	P53202	744 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	ENV11	P53246	860 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	DAK1	P54838	584 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	TBF1	Q02457	562 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	DON1	Q05610	365 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	CSR1	Q06705	408 aa	Known RBP	7.28	□□□□□ -1.24
MRPS28	YDR337W	YLR001C	Q07895	862 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	ATG11	Q12527	1178 aa		7.28	□□□□□ -1.24
MRPS28	YDR337W	SPT2	P06843	333 aa	Predicted RBP	7.27	□□□□□ -1.25
MRPS28	YDR337W	SEC23	P15303	768 aa	Known RBP	7.27	□□□□□ -1.25
MRPS28	YDR337W	RAD57	P25301	460 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	DPH2	P32461	534 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	CBF2	P32504	956 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	TMT1	P32643	299 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	TIM23	P32897	222 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	GPT2	P36148	743 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	VID24	P38263	362 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	KIC1	P38692	1080 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	7.27	□□□□□ -1.25	RIP-Chip
MRPS28	YDR337W	JJJ3	P47138	172 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	YML082W	Q04533	649 aa	Known RBP	7.27	□□□□□ -1.25
MRPS28	YDR337W	RGA2	Q06407	1009 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	SUT2	Q12286	268 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	HIF1	Q12373	385 aa		7.27	□□□□□ -1.25
MRPS28	YDR337W	VMA1	P17255	1071 aa	Known RBP	7.26	□□□□□ -1.25
MRPS28	YDR337W	IME1	P21190	360 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	MCX1	P38323	520 aa	Predicted RBP	7.26	□□□□□ -1.25
MRPS28	YDR337W	SDS3	P40505	327 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	EFM4	P40516	257 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	SHE10	P53075	577 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	HOS3	Q02959	697 aa	Known RBP	7.26	□□□□□ -1.25
MRPS28	YDR337W	VPS60	Q03390	229 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	TRS130	Q03660	1102 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	SOV1	Q04748	898 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	SML1	Q04964	104 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	VAC14	Q06708	880 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	SHS1	Q07657	551 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	ICL2	Q12031	575 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	HFI1	Q12060	488 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	MCM16	Q12262	181 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	YDL206W	Q12424	762 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	ZPS1	Q12512	249 aa		7.26	□□□□□ -1.25
MRPS28	YDR337W	SRB4	P32569	687 aa		7.25	□□□□□ -1.25

Retrieved 100 of 5,963 RNA–protein pairs in 37.6 ms