RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	BUL2	Q03758	920 aa	Known RBP	4.72	□□□□□ -1.65
UBX5	YDR330W	TPP1	Q03796	238 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	YLR001C	Q07895	862 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	YLL058W	Q12198	575 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	DPH6	Q12429	685 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	TMA17	Q12513	150 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	CDC9	P04819	755 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	SRD1	P09007	221 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
UBX5	YDR330W	YSC84	P32793	468 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	NMD3	P38861	518 aa	Known RBP	4.72	□□□□□ -1.65
UBX5	YDR330W	SEC26	P41810	973 aa	Known RBP	4.72	□□□□□ -1.65
UBX5	YDR330W	NCE103	P53615	221 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	COQ4	O13525	335 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	YKR078W	P36158	585 aa	Known RBP	4.71	□□□□□ -1.66
UBX5	YDR330W	BAP2	P38084	609 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	MGS1	P40151	587 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	NIT3	P49954	291 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	HFD1	Q04458	532 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	HRQ1	Q05549	1077 aa		4.71	□□□□□ -1.66
UBX5	YDR330W	PUS7	Q08647	676 aa	Known RBP	4.71	□□□□□ -1.66
UBX5	YDR330W	RAD18	P10862	487 aa		4.7	□□□□□ -1.66
UBX5	YDR330W	AFR1	P33304	620 aa		4.7	□□□□□ -1.66
UBX5	YDR330W	STO1	P34160	861 aa	Known RBP	4.7	□□□□□ -1.66
UBX5	YDR330W	CCZ1	P38273	704 aa		4.7	□□□□□ -1.66
UBX5	YDR330W	ALT1	P52893	592 aa		4.7	□□□□□ -1.66
UBX5	YDR330W	SUB1	P54000	292 aa	Known RBP	4.7	□□□□□ -1.66
UBX5	YDR330W	COG8	Q04632	607 aa		4.7	□□□□□ -1.66
UBX5	YDR330W	TY1A-NL1	Q12391	440 aa	Known RBP	4.7	□□□□□ -1.66
UBX5	YDR330W	RPS4A	P0CX35	261 aa	Known RBP	4.69	□□□□□ -1.66
UBX5	YDR330W	RPS4B	P0CX36	261 aa	Known RBP	4.69	□□□□□ -1.66
UBX5	YDR330W	MTC2	P34246	357 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	EMC3	P36039	253 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	GYP8	P43570	497 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	GYP7	P48365	746 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	GPG1	P53130	126 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	YGR283C	P53336	341 aa	Predicted RBP	4.69	□□□□□ -1.66
UBX5	YDR330W	ATP25	Q03153	612 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	YDR514C	Q04408	483 aa		4.69	□□□□□ -1.66
UBX5	YDR330W	SFL1	P20134	766 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	NPP1	P25353	742 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	PCL2	P25693	308 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	CDC48	P25694	835 aa	Known RBP	4.68	□□□□□ -1.66
UBX5	YDR330W	SFA1	P32771	386 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	YKL151C	P36059	337 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	ERT1	P38140	529 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	BOI2	P39969	1040 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	YER158C	P40095	573 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	NIT1	P40447	199 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	CAF16	P43569	289 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	PEX8	P53248	589 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	RSC3	Q06639	885 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	MDM38	Q08179	573 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	MET7	Q08645	548 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	TRE2	Q08693	809 aa		4.68	□□□□□ -1.66
UBX5	YDR330W	TMA7	Q3E764	64 aa	Known RBP	4.68	□□□□□ -1.66
UBX5	YDR330W	KRE5	P22023	1365 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	BI4	P03879	638 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	SNF5	P18480	905 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	RSC6	P25632	483 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	GAR1	P28007	205 aa	Known RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	SEC6	P32844	805 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YBR238C	P38330	731 aa	Known RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	TSL1	P38427	1098 aa	Known RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	PIK1	P39104	1066 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YJR120W	P47157	116 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	MET13	P53128	600 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YNR014W	P53719	212 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	HPF1	Q05164	967 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	REH1	Q06709	432 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	NBA1	Q08229	501 aa	Known RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	ENV7	Q12003	364 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	CFT1	Q06632	1357 aa	Known RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	MPH2	P0CD99	609 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YHL012W	P38709	493 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	RRT14	P40470	206 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YFL054C	P43549	646 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	MAK10	Q02197	733 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	SRT1	Q03175	343 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	MTQ2	Q03920	221 aa	Predicted RBP	4.67	□□□□□ -1.66
UBX5	YDR330W	YPR196W	Q06595	470 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	GUD1	Q07729	489 aa		4.67	□□□□□ -1.66
UBX5	YDR330W	YML133C	Q03099	1374 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	YLL067C	Q07888	1374 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	YLL066C	Q99208	1374 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	SRO9	P25567	434 aa	Known RBP	4.66	□□□□□ -1.66
UBX5	YDR330W	FUN30	P31380	1131 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	PRP19	P32523	503 aa	Known RBP	4.66	□□□□□ -1.66
UBX5	YDR330W	YBR071W	P38243	211 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	GPP1	P41277	250 aa	Known RBP	4.66	□□□□□ -1.66
UBX5	YDR330W	YGR035C	P53222	116 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	RIA1	P53893	1110 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	SNP1	Q00916	300 aa	Predicted RBP	4.66	□□□□□ -1.66
UBX5	YDR330W	RSB1	Q08417	382 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	YDL176W	Q12027	708 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	SLX4	Q12098	748 aa		4.66	□□□□□ -1.66
UBX5	YDR330W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
UBX5	YDR330W	EUG1	P32474	517 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	HOG1	P32485	435 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	MCD4	P36051	919 aa		4.65	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms