RNA–Protein interactions for RNA: YDL230W

PTP1, Transcript of Phosphotyrosine-specific protein phosphatase, yeast

Gene PTP1, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTP1	YDL230W	MUD2	P36084	527 aa	Known RBP	13.28	□□□□□ -0.28
PTP1	YDL230W	PEA2	P40091	420 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	MAD1	P40957	749 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	UBP15	P50101	1230 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	VTI1	Q04338	217 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	SFH1	Q06168	426 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	NOC3	Q07896	663 aa	Predicted RBP	13.28	□□□□□ -0.28
PTP1	YDL230W	TY1B-A	O13527	1196 aa	Known RBP	13.27	□□□□□ -0.29
PTP1	YDL230W	MSH1	P25846	959 aa		13.27	□□□□□ -0.29
PTP1	YDL230W	CDC11	P32458	415 aa		13.27	□□□□□ -0.29
PTP1	YDL230W	VAB2	P40003	282 aa		13.27	□□□□□ -0.29
PTP1	YDL230W	CTK3	P46963	296 aa	Predicted RBP	13.27	□□□□□ -0.29
PTP1	YDL230W	CWC15	Q03772	175 aa	Known RBP	13.27	□□□□□ -0.29
PTP1	YDL230W	ERP3	Q12403	225 aa		13.27	□□□□□ -0.29
PTP1	YDL230W	YDL206W	Q12424	762 aa		13.27	□□□□□ -0.29
PTP1	YDL230W	VMA2	P16140	517 aa	Known RBP	13.26	□□□□□ -0.29
PTP1	YDL230W	MUD1	P32605	298 aa	Known RBP	13.26	□□□□□ -0.29
PTP1	YDL230W	RAD54	P32863	898 aa		13.26	□□□□□ -0.29
PTP1	YDL230W	TRZ1	P36159	838 aa	Predicted RBP	13.26	□□□□□ -0.29
PTP1	YDL230W	REG2	P38232	338 aa		13.26	□□□□□ -0.29
PTP1	YDL230W	VPS41	P38959	992 aa		13.26	□□□□□ -0.29
PTP1	YDL230W	ESBP6	P53918	673 aa		13.26	□□□□□ -0.29
PTP1	YDL230W	RAD1	P06777	1100 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	13.25	□□□□□ -0.29	not detected
PTP1	YDL230W	GCG1	P32656	232 aa	Known RBP	13.25	□□□□□ -0.29
PTP1	YDL230W	EXO5	P38289	585 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	RGD1	P38339	666 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	RAD26	P40352	1085 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	VPS53	P47061	822 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	DON1	Q05610	365 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	DUS4	Q06063	367 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	PUS5	Q06244	254 aa		13.25	□□□□□ -0.29
PTP1	YDL230W	CDC8	P00572	216 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	DED1	P06634	604 aa	Known RBP	13.24	□□□□□ -0.29
PTP1	YDL230W	TKL1	P23254	680 aa	Known RBP	13.24	□□□□□ -0.29
PTP1	YDL230W	NFU1	P32860	256 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	YKR018C	P36114	725 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	BCH2	P36122	765 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	TDA3	P38758	523 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	SLD5	Q03406	294 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	ECI1	Q05871	280 aa		13.24	□□□□□ -0.29
PTP1	YDL230W	KIP1	P28742	1111 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	SGM1	P47166	707 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	ROD1	Q02805	837 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	SYH1	Q02875	849 aa	Known RBP	13.23	□□□□□ -0.29
PTP1	YDL230W	YMR018W	Q04364	514 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	YDR278C	Q05612	105 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	CDC53	Q12018	815 aa	Known RBP	13.23	□□□□□ -0.29
PTP1	YDL230W	ZRT2	Q12436	422 aa		13.23	□□□□□ -0.29
PTP1	YDL230W	COT1	P32798	439 aa		13.22	□□□□□ -0.29
PTP1	YDL230W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	13.22	□□□□□ -0.29	not detected
PTP1	YDL230W	LAS1	P36146	502 aa	Predicted RBP	13.22	□□□□□ -0.29
PTP1	YDL230W	RCK2	P38623	610 aa		13.22	□□□□□ -0.29
PTP1	YDL230W	BRO1	P48582	844 aa		13.22	□□□□□ -0.29
PTP1	YDL230W	JJJ1	P53863	590 aa		13.22	□□□□□ -0.29
PTP1	YDL230W	YDR461C-A	Q2V2P7	80 aa		13.22	□□□□□ -0.29
PTP1	YDL230W	BLI1	P35727	113 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	TVP38	P36164	337 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	RPC17	P47076	161 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	CLA4	P48562	842 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	HSH155	P49955	971 aa	Known RBP	13.21	□□□□□ -0.29
PTP1	YDL230W	RTT102	P53330	157 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	MRS2	Q01926	470 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	VTC3	Q02725	835 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	CEF1	Q03654	590 aa	Predicted RBP	13.21	□□□□□ -0.29
PTP1	YDL230W	APL5	Q08951	932 aa	Known RBP	13.21	□□□□□ -0.29
PTP1	YDL230W	YOR223W	Q12015	292 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	SPO21	Q12411	609 aa		13.21	□□□□□ -0.29
PTP1	YDL230W	CDC33	P07260	213 aa	Known RBP	13.2	□□□□□ -0.3
PTP1	YDL230W	GDT1	P38301	280 aa	Predicted RBP	13.2	□□□□□ -0.3
PTP1	YDL230W	HMF1	P40037	129 aa	Known RBP	13.2	□□□□□ -0.3
PTP1	YDL230W	YNL320W	P42840	284 aa		13.2	□□□□□ -0.3
PTP1	YDL230W	VPS70	P47161	811 aa		13.2	□□□□□ -0.3
PTP1	YDL230W	YGR125W	P53273	1036 aa		13.2	□□□□□ -0.3
PTP1	YDL230W	OMS1	Q06668	471 aa		13.2	□□□□□ -0.3
PTP1	YDL230W	SMC5	Q08204	1093 aa		13.2	□□□□□ -0.3
PTP1	YDL230W	RUD3	Q12234	484 aa	Known RBP	13.2	□□□□□ -0.3
PTP1	YDL230W	IME1	P21190	360 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	DAL2	P25335	343 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	VPS35	P34110	944 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	VPS29	P38759	282 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	GPB2	P39717	880 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	KAP123	P40069	1113 aa	Known RBP	13.19	□□□□□ -0.3
PTP1	YDL230W	LCP5	P40079	357 aa	Predicted RBP	13.19	□□□□□ -0.3
PTP1	YDL230W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	13.19	□□□□□ -0.3	not detected
PTP1	YDL230W	COQ9	Q05779	260 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	RGA2	Q06407	1009 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	GPI13	Q07830	1017 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	IES4	Q08561	116 aa		13.19	□□□□□ -0.3
PTP1	YDL230W	YLR462W	O13556	202 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	SNF1	P06782	633 aa	Known RBP	13.18	□□□□□ -0.3
PTP1	YDL230W	CBF2	P32504	956 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	RRN6	P32786	894 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	IXR1	P33417	597 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	DBP7	P36120	742 aa	Known RBP	13.18	□□□□□ -0.3
PTP1	YDL230W	NCL1	P38205	684 aa	Known RBP	13.18	□□□□□ -0.3
PTP1	YDL230W	OLA1	P38219	394 aa	Known RBP	13.18	□□□□□ -0.3
PTP1	YDL230W	RRT2	P38332	387 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	YHL049C	P38722	271 aa		13.18	□□□□□ -0.3
PTP1	YDL230W	YEL075C	P39972	122 aa		13.18	□□□□□ -0.3

Retrieved 100 of 5,963 RNA–protein pairs in 83.9 ms