RNA–Protein interactions for RNA: YNL079C

TPM1, Transcript of Major isoform of tropomyosin, yeast

Gene TPM1, Length 600 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM1	YNL079C	PPM2	Q08282	695 aa		4.89	□□□□□ -1.63
TPM1	YNL079C	IKI3	Q06706	1349 aa	Known RBP	4.89	□□□□□ -1.63
TPM1	YNL079C	ESC1	Q03661	1658 aa	Known RBP	4.89	□□□□□ -1.63
TPM1	YNL079C	DNF1	P32660	1571 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
TPM1	YNL079C	HBS1	P32769	611 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
TPM1	YNL079C	MTC3	P53077	123 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	ORC3	P54790	616 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	SRP1	Q02821	542 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	LPX1	Q12405	387 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-JR2	P47100	1755 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-ER2	Q03619	1755 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-MR1	Q04214	1755 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-MR2	Q04670	1755 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-LR1	Q12088	1755 aa	Known RBP	4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-NL1	Q12112	1755 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-GR1	Q12141	1755 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	TY1B-BL	Q12490	1755 aa		4.88	□□□□□ -1.63
TPM1	YNL079C	RPA190	P10964	1664 aa	Known RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	CAN1	P04817	590 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	CIT2	P08679	460 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	AAR2	P32357	355 aa	Predicted RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	CDC12	P32468	407 aa	Known RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	GGA2	P38817	585 aa	Known RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	SAH1	P39954	449 aa	Known RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	SIT1	P39980	628 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	SEC26	P41810	973 aa	Known RBP	4.87	□□□□□ -1.63
TPM1	YNL079C	CTH1	P47976	325 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	INP52	P50942	1183 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	TAF8	Q03750	510 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	BRE4	Q07660	1125 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	YLL058W	Q12198	575 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	SVS1	Q12254	260 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	NUP170	P38181	1502 aa		4.87	□□□□□ -1.63
TPM1	YNL079C	SPS1	P08458	490 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	ACE2	P21192	770 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	PPH3	P32345	308 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	OMA1	P36163	345 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	ABZ1	P37254	787 aa	Predicted RBP	4.86	□□□□□ -1.63
TPM1	YNL079C	CCC2	P38995	1004 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	CHZ1	P40019	153 aa	Predicted RBP	4.86	□□□□□ -1.63
TPM1	YNL079C	RRT14	P40470	206 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	HUL4	P40985	892 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	TPO2	P53283	614 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	RGA2	Q06407	1009 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	MDM38	Q08179	573 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	HBN1	Q96VH4	193 aa		4.86	□□□□□ -1.63
TPM1	YNL079C	ADE8	P04161	214 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	GAL11	P19659	1081 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	CDC11	P32458	415 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	LIP5	P32875	414 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	HSP78	P33416	811 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	RFC5	P38251	354 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	OSW7	P43611	510 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	RIP-Chip
TPM1	YNL079C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
TPM1	YNL079C	NTE1	Q04958	1679 aa		4.85	□□□□□ -1.63
TPM1	YNL079C	TY3B-G	Q99315	1547 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	GEA2	P39993	1459 aa	Known RBP	4.84	□□□□□ -1.63
TPM1	YNL079C	AFR1	P33304	620 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	BET3	P36149	193 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	YBR284W	P38150	797 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	NUP82	P40368	713 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	FOL2	P51601	243 aa	Known RBP	4.84	□□□□□ -1.63
TPM1	YNL079C	HFM1	P51979	1187 aa		4.84	□□□□□ -1.63
TPM1	YNL079C	YDL124W	Q07551	312 aa	Known RBP	4.84	□□□□□ -1.63
TPM1	YNL079C	RPO21	P04050	1733 aa	Known RBP	4.83	□□□□□ -1.64
TPM1	YNL079C	IRC20	Q06554	1556 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	NUP159	P40477	1460 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	TOP3	P13099	656 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	NPP1	P25353	742 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	SCT1	P32784	759 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	TIM23	P32897	222 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	YRO2	P38079	344 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	GIC1	P38785	314 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	RTA1	P53047	317 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	RNH70	P53331	553 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	SRT1	Q03175	343 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	YPR071W	Q12346	211 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	AIM44	Q99299	758 aa		4.83	□□□□□ -1.64
TPM1	YNL079C	SSM4	P40318	1319 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	ERR1	P0CX10	437 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	ERR2	P0CX11	437 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	PET10	P36139	283 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	NPP2	P39997	493 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	GYP7	P48365	746 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	ENV11	P53246	860 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	BUL2	Q03758	920 aa	Known RBP	4.82	□□□□□ -1.64
TPM1	YNL079C	RSM24	Q03976	319 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	LCD1	Q04377	747 aa		4.82	□□□□□ -1.64
TPM1	YNL079C	MSD1	P15179	658 aa	Known RBP	4.81	□□□□□ -1.64
TPM1	YNL079C	APL1	P27351	700 aa		4.81	□□□□□ -1.64
TPM1	YNL079C	FUN30	P31380	1131 aa		4.81	□□□□□ -1.64
TPM1	YNL079C	DOM34	P33309	386 aa		4.81	□□□□□ -1.64
TPM1	YNL079C	TSL1	P38427	1098 aa	Known RBP	4.81	□□□□□ -1.64
TPM1	YNL079C	NMD2	P38798	1089 aa	Known RBP	4.81	□□□□□ -1.64
TPM1	YNL079C	XYL2	Q07993	356 aa		4.81	□□□□□ -1.64
TPM1	YNL079C	OSW2	Q12202	724 aa		4.81	□□□□□ -1.64
TPM1	YNL079C	RIB2	Q12362	591 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms