RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeastyeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RKR1YMR247C SVS1Q12254 260 aa1.09□□□□□ -2.23
RKR1YMR247C RPL11BQ3E757 174 aaPredicted RBP1.09□□□□□ -2.23
RKR1YMR247C AEP2P22136 580 aa1.09□□□□□ -2.24
RKR1YMR247C PRP28P23394 588 aa1.09□□□□□ -2.24
RKR1YMR247C PER1P25625 357 aa1.09□□□□□ -2.24
RKR1YMR247C AFG2P32794 780 aa1.09□□□□□ -2.24
RKR1YMR247C TYE7P33122 291 aaPredicted RBP1.09□□□□□ -2.24
RKR1YMR247C HSP78P33416 811 aa1.09□□□□□ -2.24
RKR1YMR247C TSL1P38427 1098 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C MPT5P39016 859 aaKnown RBP RIP-Chip data1.09□□□□□ -2.24not detected
RKR1YMR247C PIC2P40035 300 aa1.09□□□□□ -2.24
RKR1YMR247C PEA2P40091 420 aa1.09□□□□□ -2.24
RKR1YMR247C YIR042CP40586 236 aa1.09□□□□□ -2.24
RKR1YMR247C SLS1P42900 643 aa1.09□□□□□ -2.24
RKR1YMR247C MRK1P50873 501 aa1.09□□□□□ -2.24
RKR1YMR247C ELA1P53861 379 aaPredicted RBP1.09□□□□□ -2.24
RKR1YMR247C RNT1Q02555 471 aa1.09□□□□□ -2.24
RKR1YMR247C AIM39Q08223 395 aa1.09□□□□□ -2.24
RKR1YMR247C DIA2Q08496 732 aaPredicted RBP1.09□□□□□ -2.24
RKR1YMR247C MDM12Q92328 271 aa1.09□□□□□ -2.24
RKR1YMR247C APM4Q99186 491 aa1.09□□□□□ -2.24
RKR1YMR247C GFA1P14742 717 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C ERS1P17261 260 aa1.09□□□□□ -2.24
RKR1YMR247C HCA4P20448 770 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C PRP45P28004 379 aaPredicted RBP1.09□□□□□ -2.24
RKR1YMR247C APD1P38281 316 aa1.09□□□□□ -2.24
RKR1YMR247C PAF1P38351 445 aa1.09□□□□□ -2.24
RKR1YMR247C SIC1P38634 284 aa1.09□□□□□ -2.24
RKR1YMR247C OCA5P38738 679 aa1.09□□□□□ -2.24
RKR1YMR247C SPC97P38863 823 aa1.09□□□□□ -2.24
RKR1YMR247C IPL1P38991 367 aa1.09□□□□□ -2.24
RKR1YMR247C CAF16P43569 289 aa1.09□□□□□ -2.24
RKR1YMR247C RPN11P43588 306 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C BNA2P47125 453 aa1.09□□□□□ -2.24
RKR1YMR247C YRB30P53107 440 aaPredicted RBP1.09□□□□□ -2.24
RKR1YMR247C YGR012WP53206 393 aa1.09□□□□□ -2.24
RKR1YMR247C ORC4P54791 529 aa1.09□□□□□ -2.24
RKR1YMR247C GIS1Q03833 894 aa1.09□□□□□ -2.24
RKR1YMR247C GFD1Q04839 188 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C NSE3Q05541 303 aa1.09□□□□□ -2.24
RKR1YMR247C FAL1Q12099 399 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C LPX1Q12405 387 aaKnown RBP1.09□□□□□ -2.24
RKR1YMR247C RPO21P04050 1733 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C IRC20Q06554 1556 aa1.08□□□□□ -2.24
RKR1YMR247C GLT1Q12680 2145 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C COBP00163 385 aa1.08□□□□□ -2.24
RKR1YMR247C CIT1P00890 479 aa1.08□□□□□ -2.24
RKR1YMR247C RFA1P22336 621 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C SED4P25365 1065 aa1.08□□□□□ -2.24
RKR1YMR247C AAR2P32357 355 aaPredicted RBP1.08□□□□□ -2.24
RKR1YMR247C DEF1P35732 738 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C DID4P36108 232 aa1.08□□□□□ -2.24
RKR1YMR247C PET10P36139 283 aa1.08□□□□□ -2.24
RKR1YMR247C YHL017WP38745 532 aa1.08□□□□□ -2.24
RKR1YMR247C PHM8P40025 321 aa1.08□□□□□ -2.24
RKR1YMR247C FAF1P40546 346 aaPredicted RBP1.08□□□□□ -2.24
RKR1YMR247C YJL181WP46987 611 aa1.08□□□□□ -2.24
RKR1YMR247C VTC3Q02725 835 aa1.08□□□□□ -2.24
RKR1YMR247C DLT1Q04216 342 aa1.08□□□□□ -2.24
RKR1YMR247C TDA5Q06417 326 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C ETT1Q08421 412 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C BAS1P22035 811 aa1.08□□□□□ -2.24
RKR1YMR247C PEP7P32609 515 aa1.08□□□□□ -2.24
RKR1YMR247C APL2P36000 726 aaPredicted RBP1.08□□□□□ -2.24
RKR1YMR247C FMP52P40008 231 aa1.08□□□□□ -2.24
RKR1YMR247C SBE2P42223 864 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C UBP6P43593 499 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C DUG1P43616 481 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C ALG2P43636 503 aa1.08□□□□□ -2.24
RKR1YMR247C YJL045WP47052 634 aa1.08□□□□□ -2.24
RKR1YMR247C MDG1P53885 366 aa1.08□□□□□ -2.24
RKR1YMR247C SNP1Q00916 300 aaPredicted RBP1.08□□□□□ -2.24
RKR1YMR247C SSY1Q03770 852 aa1.08□□□□□ -2.24
RKR1YMR247C TIF35Q04067 274 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C VMS1Q04311 632 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C TRI1Q05024 226 aa1.08□□□□□ -2.24
RKR1YMR247C WHI5Q12416 295 aa1.08□□□□□ -2.24
RKR1YMR247C GCR1P07261 785 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-LR4P0C2I8 440 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C TY1A-DR6P0CX70 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-ER1P0CX71 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-LR2P0CX72 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-PLP0CX73 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-JR1P0CX74 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-LR3P0CX75 440 aa1.08□□□□□ -2.24
RKR1YMR247C TY1A-ML2P0CX76 440 aa1.08□□□□□ -2.24
RKR1YMR247C INO1P11986 533 aa1.08□□□□□ -2.24
RKR1YMR247C CDC20P26309 610 aa1.08□□□□□ -2.24
RKR1YMR247C STE13P33894 931 aa1.08□□□□□ -2.24
RKR1YMR247C CTF13P35203 478 aa1.08□□□□□ -2.24
RKR1YMR247C ABZ1P37254 787 aaPredicted RBP1.08□□□□□ -2.24
RKR1YMR247C PTC7P38797 343 aa1.08□□□□□ -2.24
RKR1YMR247C REV7P38927 245 aa1.08□□□□□ -2.24
RKR1YMR247C MEF2P39677 819 aa1.08□□□□□ -2.24
RKR1YMR247C RPS26AP39938 119 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C RPS26BP39939 119 aaKnown RBP1.08□□□□□ -2.24
RKR1YMR247C LAS21P40367 830 aa1.08□□□□□ -2.24
RKR1YMR247C PUS2P53167 370 aa1.08□□□□□ -2.24
RKR1YMR247C NPL3Q01560 414 aaKnown RBP RIP-Chip data1.08□□□□□ -2.24not detected
RKR1YMR247C SRT1Q03175 343 aa1.08□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 68.2 ms