RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	DLD1	P32891	587 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	STO1	P34160	861 aa	Known RBP	5.12	□□□□□ -1.59
SOF1	YLL011W	ATG14	P38270	344 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	YBR238C	P38330	731 aa	Known RBP	5.12	□□□□□ -1.59
SOF1	YLL011W	BIT2	P38346	545 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	LSB6	P42951	607 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	CAF16	P43569	289 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	PTK2	P47116	818 aa	Known RBP	5.12	□□□□□ -1.59
SOF1	YLL011W	PAP2	P53632	584 aa	Known RBP	5.12	□□□□□ -1.59
SOF1	YLL011W	HED1	Q03937	162 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	LCD1	Q04377	747 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	RSC3	Q06639	885 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	MET32	Q12041	191 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	RTP1	Q12751	981 aa		5.12	□□□□□ -1.59
SOF1	YLL011W	ADE8	P04161	214 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	HMG1	P12683	1054 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	PFK1	P16861	987 aa	Known RBP	5.11	□□□□□ -1.59
SOF1	YLL011W	RGD1	P38339	666 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	ACA1	P39970	489 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	TOK1	P40310	691 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	FET4	P40988	552 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	MNN11	P46985	422 aa	Known RBP	5.11	□□□□□ -1.59
SOF1	YLL011W	YGR153W	P48238	217 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	UTP22	P53254	1237 aa	Predicted RBP	5.11	□□□□□ -1.59
SOF1	YLL011W	BIO5	P53744	561 aa	Known RBP	5.11	□□□□□ -1.59
SOF1	YLL011W	YNR065C	P53751	1116 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	BUL2	Q03758	920 aa	Known RBP	5.11	□□□□□ -1.59
SOF1	YLL011W	ATG33	Q06485	197 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	RKR1	Q04781	1562 aa		5.11	□□□□□ -1.59
SOF1	YLL011W	PAN1	P32521	1480 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	CHS3	P29465	1165 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	HEM12	P32347	362 aa	Predicted RBP	5.1	□□□□□ -1.59
SOF1	YLL011W	HSE1	P38753	452 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	ERR3	P42222	437 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	YGR283C	P53336	341 aa	Predicted RBP	5.1	□□□□□ -1.59
SOF1	YLL011W	RKM2	Q03942	479 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	NEW1	Q08972	1196 aa	Known RBP	5.1	□□□□□ -1.59
SOF1	YLL011W	HIF1	Q12373	385 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	PTC5	Q12511	572 aa		5.1	□□□□□ -1.59
SOF1	YLL011W	RPA190	P10964	1664 aa	Known RBP	5.1	□□□□□ -1.59
SOF1	YLL011W	GEA2	P39993	1459 aa	Known RBP	5.1	□□□□□ -1.59
SOF1	YLL011W	MSS18	P08593	268 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	PHO81	P17442	1178 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	COX11	P19516	300 aa	Known RBP	5.09	□□□□□ -1.59
SOF1	YLL011W	PER1	P25625	357 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	HOG1	P32485	435 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	AFR1	P33304	620 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	APL2	P36000	726 aa	Predicted RBP	5.09	□□□□□ -1.59
SOF1	YLL011W	MCD4	P36051	919 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	IML2	P47031	731 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	NPY1	P53164	384 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	VPS30	Q02948	557 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	YDR338C	Q05497	695 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	NBA1	Q08229	501 aa	Known RBP	5.09	□□□□□ -1.59
SOF1	YLL011W	MET7	Q08645	548 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	YDR056C	Q12025	205 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	BNI1	P41832	1953 aa		5.09	□□□□□ -1.59
SOF1	YLL011W	ESC1	Q03661	1658 aa	Known RBP	5.09	□□□□□ -1.6
SOF1	YLL011W	OPI1	P21957	404 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	MRPL16	P38064	232 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	SPO74	P45819	413 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	VTC4	P47075	721 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	GTR1	Q00582	310 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	COG8	Q04632	607 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	ECM38	Q05902	660 aa	Predicted RBP	5.08	□□□□□ -1.6
SOF1	YLL011W	TSR2	Q06672	205 aa	Known RBP	5.08	□□□□□ -1.6
SOF1	YLL011W	GUP2	Q08929	609 aa		5.08	□□□□□ -1.6
SOF1	YLL011W	CDC31	P06704	161 aa	Known RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	ENA1	P13587	1091 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	CHL1	P22516	861 aa	Predicted RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	DBP2	P24783	546 aa	Known RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	NPP1	P25353	742 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	BEM3	P32873	1128 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	REC104	P33323	182 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	TFC3	P34111	1160 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	VRP1	P37370	817 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	TDA3	P38758	523 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	PNT1	P38969	423 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	NEO1	P40527	1151 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	QRI7	P43122	407 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	BNA1	P47096	177 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	SRB7	P47822	140 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	CLA4	P48562	842 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	SLD3	P53135	668 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	CAF120	P53836	1060 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	ENA2	Q01896	1091 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	ECM9	Q02202	377 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	ATP25	Q03153	612 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	YIG1	Q08956	461 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	ENA5	Q12691	1091 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	RPL11A	P0C0W9	174 aa	Known RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	CDC12	P32468	407 aa	Known RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	DID4	P36108	232 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	EMP65	P40085	556 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	ESL1	P40456	1118 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	TMA108	P40462	946 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	MSB3	P48566	633 aa	Predicted RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	DAM1	P53267	343 aa		5.07	□□□□□ -1.6
SOF1	YLL011W	SRP1	Q02821	542 aa	Known RBP	5.07	□□□□□ -1.6
SOF1	YLL011W	HAS1	Q03532	505 aa	Known RBP	5.07	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 58.1 ms