RNA–Protein interactions for RNA: YDR457W

TOM1, Transcript of E3 ubiquitin ligase of the hect-domain class, yeast

Gene TOM1, Length 9,807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TOM1	YDR457W	RET1	P22276	1149 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	SRO9	P25567	434 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	RPL8B	P29453	256 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	MCM2	P29469	868 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	DUR3	P33413	735 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	TYS1	P36421	394 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	MAL31	P38156	614 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	YER034W	P40022	185 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	PHB1	P40961	287 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	CMS1	Q07897	291 aa	Known RBP	2.91	□□□□□ -1.94
TOM1	YDR457W	PGC1	Q08959	321 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	YPL260W	Q08977	551 aa		2.91	□□□□□ -1.94
TOM1	YDR457W	SLA2	P33338	968 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SAH1	P39954	449 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	RIC1	P40395	1056 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SPC105	P53148	917 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SLU7	Q02775	382 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	CIR2	Q08822	631 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	YPL225W	Q08971	146 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	YPT7	P32939	208 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	YJR142W	P47173	342 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	IMP4	P53941	290 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	YNL050C	P53952	270 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	NHP10	Q03435	203 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	FUS2	Q05670	677 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SPO77	Q06134	477 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SIL1	Q08199	421 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	YOR296W	Q08748	1289 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	SEC23	P15303	768 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	YME2	P32843	850 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	RAD54	P32863	898 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	RKM3	P38222	552 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	BDH2	P39713	417 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	VID27	P40157	782 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	YMR147W	P40218	223 aa	Known RBP	2.9	□□□□□ -1.94
TOM1	YDR457W	SNL1	P40548	159 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	YMR102C	Q03177	834 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	HOS1	Q12214	470 aa		2.9	□□□□□ -1.94
TOM1	YDR457W	GUK1	P15454	187 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	PDC5	P16467	563 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	SEC14	P24280	304 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	SEC65	P29478	273 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	SIN4	P32259	974 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	GYP6	P32806	458 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	BZZ1	P38822	633 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	CRP1	P38845	465 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	AIM21	P40563	679 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	YFL066C	P43538	392 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	FYV6	P53913	173 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	APM1	Q00776	475 aa	Predicted RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	MUS81	Q04149	632 aa	Predicted RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	YAP7	Q08182	245 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	YPR204W	Q08995	1032 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	CHS5	Q12114	671 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	COX6	P00427	148 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	RPP2B	P02400	110 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	REP1	P03871	373 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	CBS2	P14905	389 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	IFM1	P25038	676 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	PHO87	P25360	923 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	ITR1	P30605	584 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	MRP4	P32902	394 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	KHA1	P40309	873 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	UFE1	P41834	346 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	SER2	P42941	309 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	IST1	P53843	298 aa	Predicted RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	SPP2	Q02521	185 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	2.9	□□□□□ -1.95	not detected
TOM1	YDR457W	CUE5	Q08412	411 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	LDB17	Q12342	491 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	NUP60	P39705	539 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	MOG1	P47123	218 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	GCR2	Q01722	534 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	VPS54	Q12071	889 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	RAM2	P29703	316 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	TRM5	P38793	499 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	IRC8	P47046	822 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	HTS1	P07263	546 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	PEP5	P12868	1029 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	LRG1	P35688	1017 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	MCD4	P36051	919 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	FSH1	P38777	243 aa	Known RBP	2.9	□□□□□ -1.95
TOM1	YDR457W	TEA1	P47988	759 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	GYL1	Q04322	720 aa		2.9	□□□□□ -1.95
TOM1	YDR457W	GPH1	P06738	902 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	BRN1	P38170	754 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	EFM2	P38347	419 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	IOC3	P43596	787 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	SKO1	Q02100	647 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	CSI1	Q04368	295 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	POL30	P15873	258 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	ULP2	P40537	1034 aa	Predicted RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	PRO2	P54885	456 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	EFR3	Q03653	782 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	BUD22	Q04347	519 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	YMR027W	Q04371	470 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	NSL1	Q12143	216 aa		2.89	□□□□□ -1.95
TOM1	YDR457W	NGR1	P32831	672 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	RRP3	P38712	501 aa	Known RBP	2.89	□□□□□ -1.95
TOM1	YDR457W	YER130C	P39959	443 aa		2.89	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms