RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 TCTN2Q96GX1 697 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 SPHK1Q9NYA1 384 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 PILRAQ9UKJ1 303 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 BTRCQ9Y297 605 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 CLEC3AO75596 197 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 MAPK1P28482 360 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 SCTRP47872 440 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 FOXA1P55317 472 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 TUBB3Q13509 450 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 TRA2AQ13595 282 aaKnown RBP eCLIP8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNHIT3Q15649 155 aaPredicted RBP8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 ZIC1Q15915 447 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 NIPAL1Q6NVV3 410 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 FAM9CQ8IZT9 166 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 CDYL2Q8N8U2 506 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 CMTM7Q96FZ5 175 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 CDC6Q99741 560 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 TBC1D10AQ9BXI6 508 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNF395Q9H8N7 513 aaPredicted RBP8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 DMRT3Q9NQL9 472 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 SEMA4GQ9NTN9 838 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 PDP2Q9P2J9 529 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 FTSJ1Q9UET6 329 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 CCL27Q9Y4X3 112 aa8.06□□□□□ -1.12
PTPDC1-201ENST00000288976 A0A1B0GTL3 188 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 SDHDO14521 159 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PIP5K1BO14986 540 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 LDOC1O95751 146 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 FEN1P39748 380 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TMEM35AQ53FP2 167 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 SPIN4Q56A73 249 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CATSPEREQ5SY80 951 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CHSY3Q70JA7 882 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 NAXDQ8IW45 347 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CPSF7Q8N684 471 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 EID2Q8N6I1 236 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TRPV3Q8NET8 790 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 EDEM2Q9BV94 578 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 MCCC2Q9HCC0 563 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ADAM29Q9UKF5 820 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CACNA1IQ9P0X4 2223 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PPP6CO00743 305 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CDX4O14627 284 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PRAMEF4O60810 478 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CD1CP29017 333 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PRAMEF9Q5VWM5 478 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CLEC6AQ6EIG7 209 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CYB5D1Q6P9G0 228 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TMIGD1Q6UXZ0 262 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CCDC81Q6ZN84 652 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 LARP4Q71RC2 724 aaKnown RBP eCLIP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ZFAND4Q86XD8 727 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CDK20Q8IZL9 346 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 C19orf47Q8N9M1 422 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 OR4D9Q8NGE8 314 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 FAM120BQ96EK7 910 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 C5orf34Q96MH7 638 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNF285Q96NJ3 590 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CDK15Q96Q40 435 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 BRINP2Q9C0B6 783 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TUBB1Q9H4B7 451 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNF768Q9H5H4 540 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TCF7L2Q9NQB0 619 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CUEDC1Q9NWM3 386 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 SH3BGRL2Q9UJC5 107 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNF490Q9ULM2 529 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 MAPRE3Q9UPY8 281 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ARID1AO14497 2285 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 LINC00854A0A1B0GVQ3 168 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CCDC22O60826 627 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PDYNP01213 254 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 SERPINA6P08185 405 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CD59P13987 128 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 CKMT2P17540 419 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 POLR2CP19387 275 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 PSMB5P28074 263 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 IFI44Q8TCB0 444 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 UTP15Q8TED0 518 aaKnown RBP8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 TM4SF19Q96DZ7 209 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 GRIP2Q9C0E4 1043 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ZNF385DQ9H6B1 395 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 FSCN3Q9NQT6 498 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 ANAPC2Q9UJX6 822 aa8.05□□□□□ -1.12
PTPDC1-201ENST00000288976 WNK1Q9H4A3 2382 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 TMEM233B4DJY2 109 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 NTN3O00634 580 aaPredicted RBP8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 LRATO95237 230 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 STATHP02808 62 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 PTX3P26022 381 aaPredicted RBP8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 VARSP26640 1264 aaKnown RBP8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 PGM1P36871 562 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 C21orf58P58505 322 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 ABRAXAS2Q15018 415 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 TAF13Q15543 124 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 TMEM71Q6P5X7 295 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 GLRX5Q86SX6 157 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 OR7G3Q8NG95 312 aa8.04□□□□□ -1.12
PTPDC1-201ENST00000288976 SUN3Q8TAQ9 357 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms