RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TFAP2CQ92754 450 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NKD1Q969G9 470 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NRBF2Q96F24 287 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 P2RY11Q96G91 374 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ZNF469Q96JG9 3925 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 FAR2Q96K12 515 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SIGLEC10Q96LC7 697 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 RNF157Q96PX1 679 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TSPAN18Q96SJ8 248 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TCF12Q99081 682 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 RBBP8Q99708 897 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 HGH1Q9BTY7 390 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 C9orf16Q9BUW7 83 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ADI1Q9BV57 179 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 BBS2Q9BXC9 721 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NPLQ9BXD5 320 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 MROQ9BYG7 248 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 COG4Q9H9E3 785 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 EFCAB1Q9HAE3 211 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A7Q9HAW7 530 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A10Q9HAW8 530 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 UGT1A8Q9HAW9 530 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SGK2Q9HBY8 427 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SLAMF7Q9NQ25 335 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 XPNPEP1Q9NQW7 623 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 DLL4Q9NR61 685 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SPHK2Q9NRA0 654 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SNX15Q9NRS6 342 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.08□□□□□ -1.76
LIG3-211ENST00000588713 OLAHQ9NV23 265 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 PRMT7Q9NVM4 692 aaPredicted RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 PNPOQ9NVS9 261 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ARMC1Q9NVT9 282 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 ASNSD1Q9NWL6 643 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NLGN3Q9NZ94 848 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 NCKIPSDQ9NZQ3 722 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D14Q9P2M4 693 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 AGO2Q9UKV8 859 aaKnown RBP4.08□□□□□ -1.76
LIG3-211ENST00000588713 HRH3Q9Y5N1 445 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 SNX9Q9Y5X1 595 aa4.08□□□□□ -1.76
LIG3-211ENST00000588713 OBSL1O75147 1896 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 COL27A1Q8IZC6 1860 aaPredicted RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 TACC2O95359 2948 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 AQP12BA6NM10 295 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TRPC5OSA6NMA1 111 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 FAM47E-STBD1D6RA91 191 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 K7ESM1 405 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 RNF103O00237 685 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 AIM2O14862 343 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 RGS13O14921 159 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 PFDN6O15212 129 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TIMM44O43615 452 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 KDM1AO60341 852 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 NPHS1O60500 1241 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TRIM13O60858 407 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ZMPSTE24O75844 475 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 CLPXO76031 633 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ATE1O95260 518 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 STAU1O95793 577 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 BCL10O95999 233 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 EDN1P05305 212 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 APRTP07741 180 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 GIMD1P0DJR0 217 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ARAFP10398 606 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 IRF1P10914 325 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ENO3P13929 434 aaPredicted RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 TYRP14679 529 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 POLR2EP19388 210 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 CCNA2P20248 432 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 GPD1P21695 349 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 CD82P27701 267 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 GABRB3P28472 473 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 HTR1EP28566 365 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 MIPP30301 263 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ARRB2P32121 409 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 RFC1P35251 1148 aaPredicted RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 NR2C2P49116 596 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 HLCSP50747 726 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ATP4BP51164 291 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 KPNA2P52292 529 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 ZNF143P52747 638 aaPredicted RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 CSE1LP55060 971 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 CDH6P55285 790 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 PSMC1P62191 440 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 MPP1Q00013 466 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TLE4Q04727 773 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 FOXM1Q08050 763 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 BNIP2Q12982 314 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 STX5Q13190 355 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ART3Q13508 389 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 PEX6Q13608 980 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ATP1A4Q13733 1029 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TRIM25Q14258 630 aaKnown RBP4.07□□□□□ -1.76
LIG3-211ENST00000588713 INPP5AQ14642 412 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 RAB39AQ14964 217 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 NR1D2Q14995 579 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 NR0B2Q15466 257 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 ATP6AP1Q15904 470 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 TRIM16LQ309B1 348 aa4.07□□□□□ -1.76
LIG3-211ENST00000588713 SLC36A3Q495N2 470 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms