RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	SNU71	P53207	620 aa	Known RBP	5.61	□□□□□ -1.51
CUP9	YPL177C	GCN5	Q03330	439 aa		5.61	□□□□□ -1.51
CUP9	YPL177C	SGD1	Q06132	899 aa		5.61	□□□□□ -1.51
CUP9	YPL177C	LAM1	P38851	1228 aa		5.6	□□□□□ -1.51
CUP9	YPL177C	GPB2	P39717	880 aa		5.6	□□□□□ -1.51
CUP9	YPL177C	EST2	Q06163	884 aa		5.6	□□□□□ -1.51
CUP9	YPL177C	HXK1	P04806	485 aa	Known RBP	5.59	□□□□□ -1.51
CUP9	YPL177C	SNF5	P18480	905 aa		5.59	□□□□□ -1.51
CUP9	YPL177C	TAT2	P38967	592 aa		5.59	□□□□□ -1.51
CUP9	YPL177C	MEF2	P39677	819 aa		5.59	□□□□□ -1.51
CUP9	YPL177C	SPT20	P50875	604 aa		5.59	□□□□□ -1.51
CUP9	YPL177C	CCZ1	P38273	704 aa		5.58	□□□□□ -1.52
CUP9	YPL177C	PIC2	P40035	300 aa		5.58	□□□□□ -1.52
CUP9	YPL177C	SEC26	P41810	973 aa	Known RBP	5.58	□□□□□ -1.52
CUP9	YPL177C	YGR122W	P53272	402 aa		5.58	□□□□□ -1.52
CUP9	YPL177C	TNA1	P53322	534 aa		5.58	□□□□□ -1.52
CUP9	YPL177C	CYC1	P00044	109 aa	Predicted RBP	5.57	□□□□□ -1.52
CUP9	YPL177C	TUB2	P02557	457 aa	Known RBP	5.57	□□□□□ -1.52
CUP9	YPL177C	CYC8	P14922	966 aa		5.57	□□□□□ -1.52
CUP9	YPL177C	PEP7	P32609	515 aa		5.57	□□□□□ -1.52
CUP9	YPL177C	PIK1	P39104	1066 aa		5.57	□□□□□ -1.52
CUP9	YPL177C	HOS3	Q02959	697 aa	Known RBP	5.57	□□□□□ -1.52
CUP9	YPL177C	PTC5	Q12511	572 aa		5.57	□□□□□ -1.52
CUP9	YPL177C	ALG3	P38179	458 aa		5.56	□□□□□ -1.52
CUP9	YPL177C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.56	□□□□□ -1.52	not detected
CUP9	YPL177C	HNT2	P49775	206 aa		5.56	□□□□□ -1.52
CUP9	YPL177C	DUS4	Q06063	367 aa		5.56	□□□□□ -1.52
CUP9	YPL177C	SPO21	Q12411	609 aa		5.56	□□□□□ -1.52
CUP9	YPL177C	RAD2	P07276	1031 aa		5.55	□□□□□ -1.52
CUP9	YPL177C	PAM1	P37304	830 aa	Known RBP	5.55	□□□□□ -1.52
CUP9	YPL177C	RPN3	P40016	523 aa	Known RBP	5.55	□□□□□ -1.52
CUP9	YPL177C	PLB2	Q03674	706 aa		5.55	□□□□□ -1.52
CUP9	YPL177C	YOR352W	Q08816	343 aa		5.55	□□□□□ -1.52
CUP9	YPL177C	MRPS18	P42847	217 aa		5.54	□□□□□ -1.52
CUP9	YPL177C	ROT1	Q03691	256 aa		5.54	□□□□□ -1.52
CUP9	YPL177C	DED1	P06634	604 aa	Known RBP	5.53	□□□□□ -1.52
CUP9	YPL177C	PRE9	P23638	258 aa	Known RBP	5.53	□□□□□ -1.52
CUP9	YPL177C	DOM34	P33309	386 aa		5.53	□□□□□ -1.52
CUP9	YPL177C	YPL260W	Q08977	551 aa		5.53	□□□□□ -1.52
CUP9	YPL177C	TAF13	P11747	167 aa		5.52	□□□□□ -1.53
CUP9	YPL177C	SRM1	P21827	482 aa		5.52	□□□□□ -1.53
CUP9	YPL177C	RSB1	Q08417	382 aa		5.52	□□□□□ -1.53
CUP9	YPL177C	MCD1	Q12158	566 aa		5.52	□□□□□ -1.53
CUP9	YPL177C	RIB2	Q12362	591 aa	Known RBP	5.52	□□□□□ -1.53
CUP9	YPL177C	GAL10	P04397	699 aa		5.51	□□□□□ -1.53
CUP9	YPL177C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.51	□□□□□ -1.53	not detected
CUP9	YPL177C	YFL054C	P43549	646 aa		5.51	□□□□□ -1.53
CUP9	YPL177C	NOP7	P53261	605 aa	Known RBP	5.51	□□□□□ -1.53
CUP9	YPL177C	RAT1	Q02792	1006 aa	Known RBP	5.51	□□□□□ -1.53
CUP9	YPL177C	JIP5	Q06214	492 aa	Predicted RBP	5.51	□□□□□ -1.53
CUP9	YPL177C	ESF1	Q06344	628 aa	Known RBP	5.51	□□□□□ -1.53
CUP9	YPL177C	PNS1	Q12412	539 aa		5.51	□□□□□ -1.53
CUP9	YPL177C	CDC6	P09119	513 aa		5.5	□□□□□ -1.53
CUP9	YPL177C	CDC20	P26309	610 aa		5.5	□□□□□ -1.53
CUP9	YPL177C	ROD1	Q02805	837 aa		5.5	□□□□□ -1.53
CUP9	YPL177C	TAD3	Q9URQ3	322 aa		5.5	□□□□□ -1.53
CUP9	YPL177C	RMD1	Q03441	430 aa		5.49	□□□□□ -1.53
CUP9	YPL177C	PUS9	Q12069	462 aa		5.49	□□□□□ -1.53
CUP9	YPL177C	CMP2	P14747	604 aa		5.48	□□□□□ -1.53
CUP9	YPL177C	TRM2	P33753	639 aa		5.48	□□□□□ -1.53
CUP9	YPL177C	MET10	P39692	1035 aa		5.48	□□□□□ -1.53
CUP9	YPL177C	RSM24	Q03976	319 aa		5.48	□□□□□ -1.53
CUP9	YPL177C	MKK2	P32491	506 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	LST4	P34239	828 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	GNP1	P48813	663 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	SLI1	P53304	468 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	SIW14	P53965	281 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	SVF1	Q05515	481 aa		5.47	□□□□□ -1.53
CUP9	YPL177C	GCR1	P07261	785 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	STE11	P23561	717 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	PET112	P33893	541 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	RFC5	P38251	354 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	HXT13	P39924	564 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	ENT3	P47160	408 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	HXT17	P53631	564 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	HXT15	P54854	567 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	TMA10	Q06177	86 aa		5.46	□□□□□ -1.54
CUP9	YPL177C	ACK1	Q07622	623 aa	Predicted RBP	5.46	□□□□□ -1.54
CUP9	YPL177C	RGD1	P38339	666 aa		5.45	□□□□□ -1.54
CUP9	YPL177C	MRL1	Q06815	381 aa		5.45	□□□□□ -1.54
CUP9	YPL177C	RXT3	Q07458	294 aa		5.45	□□□□□ -1.54
CUP9	YPL177C	GPB1	Q08886	897 aa		5.45	□□□□□ -1.54
CUP9	YPL177C	YER152C	P10356	443 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	HCM1	P25364	564 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	MAD1	P40957	749 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	MSE1	P48525	536 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	VPS62	P53285	467 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	SIZ1	Q04195	904 aa		5.44	□□□□□ -1.54
CUP9	YPL177C	MNN10	P50108	393 aa	Known RBP	5.43	□□□□□ -1.54
CUP9	YPL177C	MCM6	P53091	1017 aa	Known RBP	5.43	□□□□□ -1.54
CUP9	YPL177C	SUN4	P53616	420 aa		5.42	□□□□□ -1.54
CUP9	YPL177C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	5.42	□□□□□ -1.54	not detected
CUP9	YPL177C	VPS16	Q03308	798 aa		5.42	□□□□□ -1.54
CUP9	YPL177C	YAP6	Q03935	383 aa		5.42	□□□□□ -1.54
CUP9	YPL177C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	5.42	□□□□□ -1.54	not detected
CUP9	YPL177C	SVS1	Q12254	260 aa		5.42	□□□□□ -1.54
CUP9	YPL177C	NTO1	Q12311	748 aa		5.42	□□□□□ -1.54
CUP9	YPL177C	DUT1	P33317	147 aa		5.41	□□□□□ -1.54
CUP9	YPL177C	MNR2	P35724	969 aa		5.41	□□□□□ -1.54
CUP9	YPL177C	PBP1	P53297	722 aa	Known RBP	5.41	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms