RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W PUF4P25339 888 aaKnown RBP RIP-Chip data5.91□□□□□ -1.46not detected
UBP8YMR223W SLD2P34252 453 aa5.91□□□□□ -1.46
UBP8YMR223W LAM1P38851 1228 aa5.91□□□□□ -1.46
UBP8YMR223W GPB2P39717 880 aa5.9□□□□□ -1.47
UBP8YMR223W SPO21Q12411 609 aa5.9□□□□□ -1.47
UBP8YMR223W IPL1P38991 367 aa5.89□□□□□ -1.47
UBP8YMR223W MEF2P39677 819 aa5.89□□□□□ -1.47
UBP8YMR223W GCN5Q03330 439 aa5.89□□□□□ -1.47
UBP8YMR223W DED1P06634 604 aaKnown RBP5.88□□□□□ -1.47
UBP8YMR223W DOM34P33309 386 aa5.88□□□□□ -1.47
UBP8YMR223W RGD1P38339 666 aa5.88□□□□□ -1.47
UBP8YMR223W SEN54Q02825 467 aaPredicted RBP5.88□□□□□ -1.47
UBP8YMR223W RAD2P07276 1031 aa5.87□□□□□ -1.47
UBP8YMR223W CYC1P00044 109 aaPredicted RBP5.86□□□□□ -1.47
UBP8YMR223W MKK2P32491 506 aa5.86□□□□□ -1.47
UBP8YMR223W SEC8P32855 1065 aa5.86□□□□□ -1.47
UBP8YMR223W TAT2P38967 592 aa5.86□□□□□ -1.47
UBP8YMR223W SPT20P50875 604 aa5.86□□□□□ -1.47
UBP8YMR223W ROD1Q02805 837 aa5.86□□□□□ -1.47
UBP8YMR223W RSM24Q03976 319 aa5.86□□□□□ -1.47
UBP8YMR223W CYC8P14922 966 aa5.85□□□□□ -1.47
UBP8YMR223W CTS1P29029 562 aa5.85□□□□□ -1.47
UBP8YMR223W ABZ1P37254 787 aaPredicted RBP5.85□□□□□ -1.47
UBP8YMR223W SHM2P37291 469 aaKnown RBP5.85□□□□□ -1.47
UBP8YMR223W RFC5P38251 354 aa5.84□□□□□ -1.47
UBP8YMR223W MGE1P38523 228 aa5.84□□□□□ -1.47
UBP8YMR223W HXT13P39924 564 aa5.84□□□□□ -1.47
UBP8YMR223W GNP1P48813 663 aa5.84□□□□□ -1.47
UBP8YMR223W HXT17P53631 564 aa5.84□□□□□ -1.47
UBP8YMR223W HXT15P54854 567 aa5.84□□□□□ -1.47
UBP8YMR223W RAT1Q02792 1006 aaKnown RBP5.84□□□□□ -1.47
UBP8YMR223W DUS4Q06063 367 aa5.84□□□□□ -1.47
UBP8YMR223W SYP1P25623 870 aaKnown RBP5.83□□□□□ -1.48
UBP8YMR223W MPT5P39016 859 aaKnown RBP RIP-Chip data5.83□□□□□ -1.48not detected
UBP8YMR223W CNN1P43618 361 aa5.82□□□□□ -1.48
UBP8YMR223W KIN2P13186 1147 aaKnown RBP5.82□□□□□ -1.48
UBP8YMR223W RPS26AP39938 119 aaKnown RBP5.82□□□□□ -1.48
UBP8YMR223W RPS26BP39939 119 aaKnown RBP5.82□□□□□ -1.48
UBP8YMR223W PBP1P53297 722 aaKnown RBP5.82□□□□□ -1.48
UBP8YMR223W ATG13Q06628 738 aa5.82□□□□□ -1.48
UBP8YMR223W TUB2P02557 457 aaKnown RBP5.81□□□□□ -1.48
UBP8YMR223W DBP5P20449 482 aaKnown RBP5.81□□□□□ -1.48
UBP8YMR223W PLB2Q03674 706 aa5.81□□□□□ -1.48
UBP8YMR223W ROT1Q03691 256 aa5.81□□□□□ -1.48
UBP8YMR223W MRL1Q06815 381 aa5.81□□□□□ -1.48
UBP8YMR223W RXT3Q07458 294 aa5.81□□□□□ -1.48
UBP8YMR223W SIZ1Q04195 904 aa5.8□□□□□ -1.48
UBP8YMR223W GAL10P04397 699 aa5.79□□□□□ -1.48
UBP8YMR223W YER152CP10356 443 aa5.79□□□□□ -1.48
UBP8YMR223W STE11P23561 717 aa5.79□□□□□ -1.48
UBP8YMR223W SVS1Q12254 260 aa5.79□□□□□ -1.48
UBP8YMR223W GCR1P07261 785 aa5.78□□□□□ -1.48
UBP8YMR223W CMP2P14747 604 aa5.78□□□□□ -1.48
UBP8YMR223W CDC20P26309 610 aa5.78□□□□□ -1.48
UBP8YMR223W MLS1P30952 554 aa5.78□□□□□ -1.48
UBP8YMR223W MPH1P40562 993 aa5.78□□□□□ -1.48
UBP8YMR223W YJR107WP47145 328 aa5.78□□□□□ -1.48
UBP8YMR223W URN1Q06525 465 aaKnown RBP5.78□□□□□ -1.48
UBP8YMR223W ACK1Q07622 623 aaPredicted RBP5.78□□□□□ -1.48
UBP8YMR223W SRM1P21827 482 aa5.77□□□□□ -1.49
UBP8YMR223W POL32P47110 350 aa5.77□□□□□ -1.49
UBP8YMR223W GPB1Q08886 897 aa5.77□□□□□ -1.49
UBP8YMR223W RAD27P26793 382 aa5.76□□□□□ -1.49
UBP8YMR223W RIB2Q12362 591 aaKnown RBP5.76□□□□□ -1.49
UBP8YMR223W TRM2P33753 639 aa5.75□□□□□ -1.49
UBP8YMR223W YFL054CP43549 646 aa5.75□□□□□ -1.49
UBP8YMR223W MNN10P50108 393 aaKnown RBP5.75□□□□□ -1.49
UBP8YMR223W ESF1Q06344 628 aaKnown RBP5.75□□□□□ -1.49
UBP8YMR223W RTT10Q08924 1013 aa5.75□□□□□ -1.49
UBP8YMR223W GNT1Q12096 491 aa5.75□□□□□ -1.49
UBP8YMR223W PNS1Q12412 539 aa5.75□□□□□ -1.49
UBP8YMR223W CDC6P09119 513 aa5.74□□□□□ -1.49
UBP8YMR223W BAS1P22035 811 aa5.74□□□□□ -1.49
UBP8YMR223W APL1P27351 700 aa5.74□□□□□ -1.49
UBP8YMR223W RRT14P40470 206 aa5.74□□□□□ -1.49
UBP8YMR223W RMD1Q03441 430 aa5.74□□□□□ -1.49
UBP8YMR223W TMA46Q12000 345 aaKnown RBP5.74□□□□□ -1.49
UBP8YMR223W THS1P04801 734 aaKnown RBP5.74□□□□□ -1.49
UBP8YMR223W MCM2P29469 868 aa5.74□□□□□ -1.49
UBP8YMR223W GEM1P39722 662 aa5.74□□□□□ -1.49
UBP8YMR223W VPS62P53285 467 aa5.74□□□□□ -1.49
UBP8YMR223W MAP1Q01662 387 aaKnown RBP RIP-Chip data5.74□□□□□ -1.49not detected
UBP8YMR223W MSC2Q03455 724 aa5.74□□□□□ -1.49
UBP8YMR223W VTS1Q08831 523 aaKnown RBP RIP-Chip data5.74□□□□□ -1.49not detected
UBP8YMR223W ACM1Q08981 209 aa5.74□□□□□ -1.49
UBP8YMR223W ACE2P21192 770 aa5.73□□□□□ -1.49
UBP8YMR223W RER2P35196 286 aa5.73□□□□□ -1.49
UBP8YMR223W GIS1Q03833 894 aa5.73□□□□□ -1.49
UBP8YMR223W TIF35Q04067 274 aaKnown RBP5.73□□□□□ -1.49
UBP8YMR223W RRP15Q06511 250 aaPredicted RBP5.73□□□□□ -1.49
UBP8YMR223W ATE1P16639 503 aa5.72□□□□□ -1.49
UBP8YMR223W LST4P34239 828 aa5.72□□□□□ -1.49
UBP8YMR223W PUS9Q12069 462 aa5.72□□□□□ -1.49
UBP8YMR223W RPL11AP0C0W9 174 aaKnown RBP5.71□□□□□ -1.5
UBP8YMR223W HCM1P25364 564 aa5.71□□□□□ -1.5
UBP8YMR223W HEM3P28789 327 aa5.71□□□□□ -1.5
UBP8YMR223W UGA2P38067 497 aa5.71□□□□□ -1.5
UBP8YMR223W RPL11BQ3E757 174 aaPredicted RBP5.71□□□□□ -1.5
UBP8YMR223W MCM6P53091 1017 aaKnown RBP5.7□□□□□ -1.5
UBP8YMR223W SPR28Q04921 423 aa5.7□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 44.7 ms