RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W LAM1P38851 1228 aa5.16□□□□□ -1.58
RPF1YHR088W SNF5P18480 905 aa5.15□□□□□ -1.59
RPF1YHR088W DOM34P33309 386 aa5.15□□□□□ -1.59
RPF1YHR088W RGD1P38339 666 aa5.15□□□□□ -1.59
RPF1YHR088W RCL1Q08096 367 aaPredicted RBP5.15□□□□□ -1.59
RPF1YHR088W SPO21Q12411 609 aa5.15□□□□□ -1.59
RPF1YHR088W MGE1P38523 228 aa5.14□□□□□ -1.59
RPF1YHR088W MEF2P39677 819 aa5.14□□□□□ -1.59
RPF1YHR088W GCN5Q03330 439 aa5.14□□□□□ -1.59
RPF1YHR088W RSM24Q03976 319 aa5.14□□□□□ -1.59
RPF1YHR088W RAD2P07276 1031 aa5.13□□□□□ -1.59
RPF1YHR088W SEC8P32855 1065 aa5.13□□□□□ -1.59
RPF1YHR088W GPB2P39717 880 aa5.13□□□□□ -1.59
RPF1YHR088W SEN54Q02825 467 aaPredicted RBP5.13□□□□□ -1.59
RPF1YHR088W URN1Q06525 465 aaKnown RBP5.13□□□□□ -1.59
RPF1YHR088W DED1P06634 604 aaKnown RBP5.12□□□□□ -1.59
RPF1YHR088W MKK2P32491 506 aa5.12□□□□□ -1.59
RPF1YHR088W RFC5P38251 354 aa5.12□□□□□ -1.59
RPF1YHR088W TAT2P38967 592 aa5.12□□□□□ -1.59
RPF1YHR088W IPL1P38991 367 aa5.12□□□□□ -1.59
RPF1YHR088W SPT20P50875 604 aa5.12□□□□□ -1.59
RPF1YHR088W PBP1P53297 722 aaKnown RBP5.12□□□□□ -1.59
RPF1YHR088W CYC1P00044 109 aaPredicted RBP5.11□□□□□ -1.59
RPF1YHR088W KIN2P13186 1147 aaKnown RBP5.11□□□□□ -1.59
RPF1YHR088W CYC8P14922 966 aa5.11□□□□□ -1.59
RPF1YHR088W ABZ1P37254 787 aaPredicted RBP5.11□□□□□ -1.59
RPF1YHR088W SYP1P25623 870 aaKnown RBP5.1□□□□□ -1.59
RPF1YHR088W CTS1P29029 562 aa5.1□□□□□ -1.59
RPF1YHR088W SHM2P37291 469 aaKnown RBP5.1□□□□□ -1.59
RPF1YHR088W CNN1P43618 361 aa5.1□□□□□ -1.59
RPF1YHR088W ROD1Q02805 837 aa5.1□□□□□ -1.59
RPF1YHR088W ATG13Q06628 738 aa5.1□□□□□ -1.59
RPF1YHR088W MPT5P39016 859 aaKnown RBP RIP-Chip data5.09□□□□□ -1.59not detected
RPF1YHR088W GNP1P48813 663 aa5.09□□□□□ -1.59
RPF1YHR088W RAT1Q02792 1006 aaKnown RBP5.09□□□□□ -1.59
RPF1YHR088W DUS4Q06063 367 aa5.09□□□□□ -1.59
RPF1YHR088W TUB2P02557 457 aaKnown RBP5.08□□□□□ -1.6
RPF1YHR088W DBP5P20449 482 aaKnown RBP5.08□□□□□ -1.6
RPF1YHR088W STE11P23561 717 aa5.08□□□□□ -1.6
RPF1YHR088W HXT13P39924 564 aa5.08□□□□□ -1.6
RPF1YHR088W HXT17P53631 564 aa5.08□□□□□ -1.6
RPF1YHR088W HXT15P54854 567 aa5.08□□□□□ -1.6
RPF1YHR088W SIZ1Q04195 904 aa5.08□□□□□ -1.6
RPF1YHR088W MRL1Q06815 381 aa5.08□□□□□ -1.6
RPF1YHR088W RXT3Q07458 294 aa5.08□□□□□ -1.6
RPF1YHR088W RAD27P26793 382 aa5.07□□□□□ -1.6
RPF1YHR088W RMD1Q03441 430 aa5.07□□□□□ -1.6
RPF1YHR088W SVS1Q12254 260 aa5.07□□□□□ -1.6
RPF1YHR088W THS1P04801 734 aaKnown RBP5.06□□□□□ -1.6
RPF1YHR088W RPS26AP39938 119 aaKnown RBP5.06□□□□□ -1.6
RPF1YHR088W RPS26BP39939 119 aaKnown RBP5.06□□□□□ -1.6
RPF1YHR088W YJR107WP47145 328 aa5.06□□□□□ -1.6
RPF1YHR088W ESF1Q06344 628 aaKnown RBP5.06□□□□□ -1.6
RPF1YHR088W YER152CP10356 443 aa5.05□□□□□ -1.6
RPF1YHR088W MLS1P30952 554 aa5.05□□□□□ -1.6
RPF1YHR088W RRT14P40470 206 aa5.05□□□□□ -1.6
RPF1YHR088W POL32P47110 350 aa5.05□□□□□ -1.6
RPF1YHR088W ROT1Q03691 256 aa5.05□□□□□ -1.6
RPF1YHR088W ACK1Q07622 623 aaPredicted RBP5.05□□□□□ -1.6
RPF1YHR088W TMA46Q12000 345 aaKnown RBP5.05□□□□□ -1.6
RPF1YHR088W GAL10P04397 699 aa5.04□□□□□ -1.6
RPF1YHR088W GCR1P07261 785 aa5.04□□□□□ -1.6
RPF1YHR088W CMP2P14747 604 aa5.04□□□□□ -1.6
RPF1YHR088W CDC20P26309 610 aa5.04□□□□□ -1.6
RPF1YHR088W TRM2P33753 639 aa5.04□□□□□ -1.6
RPF1YHR088W MPH1P40562 993 aa5.04□□□□□ -1.6
RPF1YHR088W MNN10P50108 393 aaKnown RBP5.04□□□□□ -1.6
RPF1YHR088W PLB2Q03674 706 aa5.04□□□□□ -1.6
RPF1YHR088W GPB1Q08886 897 aa5.04□□□□□ -1.6
RPF1YHR088W RTT10Q08924 1013 aa5.04□□□□□ -1.6
RPF1YHR088W GNT1Q12096 491 aa5.04□□□□□ -1.6
RPF1YHR088W PNS1Q12412 539 aa5.04□□□□□ -1.6
RPF1YHR088W RPP2AP05319 106 aaKnown RBP5.03□□□□□ -1.6
RPF1YHR088W ASF1P32447 279 aa5.03□□□□□ -1.6
RPF1YHR088W GEM1P39722 662 aa5.03□□□□□ -1.6
RPF1YHR088W BAS1P22035 811 aa5.02□□□□□ -1.61
RPF1YHR088W APL1P27351 700 aa5.02□□□□□ -1.61
RPF1YHR088W HEM3P28789 327 aa5.02□□□□□ -1.61
RPF1YHR088W ACM1Q08981 209 aa5.02□□□□□ -1.61
RPF1YHR088W SRM1P21827 482 aa5.01□□□□□ -1.61
RPF1YHR088W VPS62P53285 467 aa5.01□□□□□ -1.61
RPF1YHR088W MSC2Q03455 724 aa5.01□□□□□ -1.61
RPF1YHR088W GIS1Q03833 894 aa5.01□□□□□ -1.61
RPF1YHR088W RIB2Q12362 591 aaKnown RBP5.01□□□□□ -1.61
RPF1YHR088W CDC6P09119 513 aa5□□□□□ -1.61
RPF1YHR088W ACE2P21192 770 aa5□□□□□ -1.61
RPF1YHR088W RER2P35196 286 aa5□□□□□ -1.61
RPF1YHR088W NOP12Q08208 459 aaKnown RBP5□□□□□ -1.61
RPF1YHR088W VTS1Q08831 523 aaKnown RBP RIP-Chip data5□□□□□ -1.61not detected
RPF1YHR088W HCM1P25364 564 aa4.99□□□□□ -1.61
RPF1YHR088W SNF7P39929 240 aaKnown RBP4.99□□□□□ -1.61
RPF1YHR088W YFL054CP43549 646 aa4.99□□□□□ -1.61
RPF1YHR088W MAP1Q01662 387 aaKnown RBP RIP-Chip data4.99□□□□□ -1.61not detected
RPF1YHR088W TIF35Q04067 274 aaKnown RBP4.99□□□□□ -1.61
RPF1YHR088W RRP15Q06511 250 aaPredicted RBP4.99□□□□□ -1.61
RPF1YHR088W PUS9Q12069 462 aa4.99□□□□□ -1.61
RPF1YHR088W RPL11AP0C0W9 174 aaKnown RBP4.98□□□□□ -1.61
RPF1YHR088W MCM2P29469 868 aa4.98□□□□□ -1.61
RPF1YHR088W PMI40P29952 429 aaKnown RBP4.98□□□□□ -1.61
RPF1YHR088W LST4P34239 828 aa4.98□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms