RNA–Protein interactions for RNA: YDL042C

SIR2, Transcript of Conserved NAD+ dependent histone deacetylase of the Sirtuin family, yeast

Gene SIR2, Length 1,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR2	YDL042C	FLC1	Q08967	793 aa		8	□□□□□ -1.13
SIR2	YDL042C	CIT2	P08679	460 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	RPL8B	P29453	256 aa	Known RBP	7.99	□□□□□ -1.13
SIR2	YDL042C	NMD3	P38861	518 aa	Known RBP	7.99	□□□□□ -1.13
SIR2	YDL042C	MBP1	P39678	833 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	BUD6	P41697	788 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	YGR125W	P53273	1036 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	RNH70	P53331	553 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	GIC2	Q06648	383 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	FMP25	Q08023	583 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	HRK1	Q08732	759 aa	Known RBP	7.99	□□□□□ -1.13
SIR2	YDL042C	SPO21	Q12411	609 aa		7.99	□□□□□ -1.13
SIR2	YDL042C	RPS4A	P0CX35	261 aa	Known RBP	7.98	□□□□□ -1.13
SIR2	YDL042C	RPS4B	P0CX36	261 aa	Known RBP	7.98	□□□□□ -1.13
SIR2	YDL042C	ALT1	P52893	592 aa		7.98	□□□□□ -1.13
SIR2	YDL042C	YDR215C	Q12240	137 aa		7.98	□□□□□ -1.13
SIR2	YDL042C	NMD2	P38798	1089 aa	Known RBP	7.98	□□□□□ -1.13
SIR2	YDL042C	SLN1	P39928	1220 aa	Predicted RBP	7.98	□□□□□ -1.13
SIR2	YDL042C	PFD1	P46988	109 aa		7.98	□□□□□ -1.13
SIR2	YDL042C	EAF1	Q06337	982 aa		7.98	□□□□□ -1.13
SIR2	YDL042C	YER152C	P10356	443 aa		7.97	□□□□□ -1.13
SIR2	YDL042C	GPB2	P39717	880 aa		7.97	□□□□□ -1.13
SIR2	YDL042C	ERP6	P53198	216 aa		7.97	□□□□□ -1.13
SIR2	YDL042C	TPP1	Q03796	238 aa		7.97	□□□□□ -1.13
SIR2	YDL042C	SPP382	Q06411	708 aa	Predicted RBP	7.97	□□□□□ -1.13
SIR2	YDL042C	HSP60	P19882	572 aa	Known RBP	7.96	□□□□□ -1.13
SIR2	YDL042C	YCK2	P23292	546 aa	Known RBP	7.96	□□□□□ -1.13
SIR2	YDL042C	PPG1	P32838	368 aa		7.96	□□□□□ -1.13
SIR2	YDL042C	SIP5	P40210	489 aa	Known RBP	7.96	□□□□□ -1.13
SIR2	YDL042C	YJL045W	P47052	634 aa		7.96	□□□□□ -1.13
SIR2	YDL042C	PUS7	Q08647	676 aa	Known RBP	7.96	□□□□□ -1.13
SIR2	YDL042C	PRP9	P19736	530 aa	Known RBP	7.95	□□□□□ -1.14
SIR2	YDL042C	TAT1	P38085	619 aa		7.95	□□□□□ -1.14
SIR2	YDL042C	YPR053C	Q6Q5F3	151 aa		7.95	□□□□□ -1.14
SIR2	YDL042C	ARE1	P25628	610 aa		7.95	□□□□□ -1.14
SIR2	YDL042C	RSP5	P39940	809 aa	Known RBP	7.95	□□□□□ -1.14
SIR2	YDL042C	PHM7	Q12252	991 aa		7.95	□□□□□ -1.14
SIR2	YDL042C	NAM7	P30771	971 aa	Known RBP	7.94	□□□□□ -1.14
SIR2	YDL042C	AKR1	P39010	764 aa		7.94	□□□□□ -1.14
SIR2	YDL042C	CHZ1	P40019	153 aa	Predicted RBP	7.94	□□□□□ -1.14
SIR2	YDL042C	UTP8	P53276	713 aa	Known RBP	7.94	□□□□□ -1.14
SIR2	YDL042C	EAR1	Q03212	550 aa		7.94	□□□□□ -1.14
SIR2	YDL042C	CIT1	P00890	479 aa		7.93	□□□□□ -1.14
SIR2	YDL042C	ALR2	P43553	858 aa		7.93	□□□□□ -1.14
SIR2	YDL042C	PPM2	Q08282	695 aa		7.93	□□□□□ -1.14
SIR2	YDL042C	RPL11A	P0C0W9	174 aa	Known RBP	7.92	□□□□□ -1.14
SIR2	YDL042C	PNT1	P38969	423 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	RPN3	P40016	523 aa	Known RBP	7.92	□□□□□ -1.14
SIR2	YDL042C	MMM1	P41800	426 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	UBX5	Q06682	500 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	RPL11B	Q3E757	174 aa	Predicted RBP	7.92	□□□□□ -1.14
SIR2	YDL042C	YSC84	P32793	468 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	GGA2	P38817	585 aa	Known RBP	7.92	□□□□□ -1.14
SIR2	YDL042C	ICP55	P40051	511 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	HUL4	P40985	892 aa		7.92	□□□□□ -1.14
SIR2	YDL042C	HOS3	Q02959	697 aa	Known RBP	7.92	□□□□□ -1.14
SIR2	YDL042C	GAL11	P19659	1081 aa		7.91	□□□□□ -1.14
SIR2	YDL042C	SKN7	P38889	622 aa		7.91	□□□□□ -1.14
SIR2	YDL042C	MXR1	P40029	184 aa		7.91	□□□□□ -1.14
SIR2	YDL042C	NUP82	P40368	713 aa		7.91	□□□□□ -1.14
SIR2	YDL042C	CAN1	P04817	590 aa		7.9	□□□□□ -1.14
SIR2	YDL042C	DBP2	P24783	546 aa	Known RBP	7.9	□□□□□ -1.14
SIR2	YDL042C	TIM23	P32897	222 aa		7.9	□□□□□ -1.14
SIR2	YDL042C	BRN1	P38170	754 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	ALG12	P53730	551 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	7.89	□□□□□ -1.15	not detected
SIR2	YDL042C	YVC1	Q12324	675 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	WHI3	P34761	661 aa	Known RBP	7.89	□□□□□ -1.15
SIR2	YDL042C	SAF1	P38352	637 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	CIT3	P43635	486 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	TNA1	P53322	534 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	7.89	□□□□□ -1.15	not detected
SIR2	YDL042C	YOR059C	Q08448	450 aa	Known RBP	7.89	□□□□□ -1.15
SIR2	YDL042C	MCA1	Q08601	432 aa		7.89	□□□□□ -1.15
SIR2	YDL042C	RRP14	P36080	434 aa	Known RBP	7.88	□□□□□ -1.15
SIR2	YDL042C	TAF8	Q03750	510 aa		7.88	□□□□□ -1.15
SIR2	YDL042C	YDR306C	Q06640	478 aa		7.88	□□□□□ -1.15
SIR2	YDL042C	TPO2	P53283	614 aa		7.87	□□□□□ -1.15
SIR2	YDL042C	ACM1	Q08981	209 aa		7.87	□□□□□ -1.15
SIR2	YDL042C	MET6	P05694	767 aa	Known RBP	7.86	□□□□□ -1.15
SIR2	YDL042C	COQ2	P32378	372 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	YHL012W	P38709	493 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	GEM1	P39722	662 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	DOS2	P54858	310 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	DUS3	Q06053	668 aa	Known RBP	7.86	□□□□□ -1.15
SIR2	YDL042C	YLR125W	Q12138	136 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	COQ4	O13525	335 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	PHO8	P11491	566 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	HBS1	P32769	611 aa	Known RBP	7.86	□□□□□ -1.15
SIR2	YDL042C	PGM1	P33401	570 aa	Known RBP	7.86	□□□□□ -1.15
SIR2	YDL042C	SPC42	P36094	363 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	BAP2	P38084	609 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	CCC2	P38995	1004 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	YFL054C	P43549	646 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	7.86	□□□□□ -1.15	not detected
SIR2	YDL042C	RCM1	P53972	490 aa		7.86	□□□□□ -1.15
SIR2	YDL042C	YDL124W	Q07551	312 aa	Known RBP	7.86	□□□□□ -1.15
SIR2	YDL042C	CHS2	P14180	963 aa		7.85	□□□□□ -1.15
SIR2	YDL042C	AAR2	P32357	355 aa	Predicted RBP	7.85	□□□□□ -1.15
SIR2	YDL042C	CDC11	P32458	415 aa		7.85	□□□□□ -1.15

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms