RNA–Protein interactions for RNA: ENSMUST00000053440.7

Ccdc40-202, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ccdc40, Length 3,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-202ENSMUST00000053440 Gm18336A0A140LIU8 765 aa11.91□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Chpf2Q3UU43 768 aa11.91□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 PzpQ61838 1495 aa11.91□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Zc3h13E9Q784 1729 aaKnown RBP11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Dennd6aQ8BH65 605 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Nol11Q8BJW5 723 aaKnown RBP11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 PtmsQ9D0J8 101 aaKnown RBP11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Stk3Q9JI10 497 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Ap3b2Q9JME5 1082 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 St18Q80TY4 1045 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 LlphQ9D945 130 aaKnown RBP11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Sytl4Q9R0Q1 673 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 FancaQ9JL70 1439 aa11.9□□□□□ -0.5
Ccdc40-202ENSMUST00000053440 Kif4P33174 1231 aa11.9□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Clcn1Q64347 994 aa11.9□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Ush1cQ9ES64 910 aa11.9□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Rcan3Q9JKK0 239 aa11.9□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Adgrb1Q3UHD1 1582 aa11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Zscan25B2RX31 543 aa11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Slc4a10Q5DTL9 1118 aa11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 AnlnQ8K298 1121 aaKnown RBP11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Atp8b2P98199 1209 aa11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Dip2bQ3UH60 1574 aa11.89□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Fez1Q8K0X8 392 aa11.88□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Slx4ipQ9D7Y9 413 aa11.88□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Cyp2d12Q8BVD2 504 aa11.88□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Tmem132eQ6IEE6 982 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Chd1lQ9CXF7 900 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Mlh1Q9JK91 760 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Pmfbp1Q9WVQ0 1022 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Idi1P58044 227 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Tpm2P58774 284 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Naa30Q8CES0 364 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Nlgn1Q99K10 843 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Disp3A3KFU9 1347 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Becn1O88597 448 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Pdzrn3Q69ZS0 1063 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Ripk4Q9ERK0 786 aa11.87□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Mcmdc2E9Q956 681 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Pcmtd1P59913 357 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 E4f1Q8CCE9 783 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Pof1bQ8K4L4 587 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Tnrc6bQ8BKI2 1810 aaKnown RBP11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Atp6v1dP57746 247 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Gzf1Q4VBD9 706 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 F2rP30558 430 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Map3k13Q1HKZ5 959 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Nol8Q3UHX0 1147 aaKnown RBP11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Babam1Q3UI43 333 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Unc5clQ6R653 518 aa11.86□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 KinQ8K339 391 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Foxp4Q9DBY0 795 aaKnown RBP11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Msh6P54276 1358 aaKnown RBP11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Tlr7P58681 1050 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Olfml1Q8BSH2 233 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Cps1Q8C196 1500 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Exoc6bA6H5Z3 810 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Mknk2Q8CDB0 459 aa11.85□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 ScaperF8VQ70 1398 aaKnown RBP11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Cyp2d11P24457 504 aa11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Zap70P43404 618 aa11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 EappQ5BU09 281 aa11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Med1Q925J9 1575 aa11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Elmsan1E9Q2I4 1089 aaKnown RBP11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 HypkQ9CR41 129 aa11.84□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Smarce1O54941 411 aaKnown RBP11.83□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Bcl2l13P59017 434 aa11.83□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Casc1Q6TDU8 730 aa11.83□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Kdm4aQ8BW72 1064 aa11.83□□□□□ -0.51
Ccdc40-202ENSMUST00000053440 Brpf1B2RRD7 1212 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Ier5O89113 308 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Anapc15P60007 132 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Zbtb45Q52KG4 520 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Bms1Q6PGF5 1284 aaKnown RBP11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Dnajc5gQ8C632 165 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Pnma3Q8JZW8 466 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Tet3Q8BG87 1668 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Stk36Q69ZM6 1316 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Frmpd2A0A140LI67 1392 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Cdk12Q14AX6 1484 aaKnown RBP11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Gjb2Q00977 226 aa11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Utp18Q5SSI6 552 aaKnown RBP11.83□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Cfdp1O88271 295 aaKnown RBP11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Hoxc9P09633 260 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Safb2Q80YR5 991 aaKnown RBP11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Igsf1Q7TQA1 1317 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 CemipQ8BI06 1361 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Fkbp4P30416 458 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 EspnlQ3UYR4 1005 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Ints3Q7TPD0 1041 aaKnown RBP11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Samm50Q8BGH2 469 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Rnf123Q5XPI3 1314 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Atf5O70191 283 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Glipr1l2Q9CQ35 332 aa11.82□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Gm10563F6WIE4 79 aa11.81□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Brf1Q8CFK2 676 aa11.81□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Zbtb22Q9Z0G7 638 aa11.81□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 RictorQ6QI06 1708 aa11.81□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Ms4a2P20490 235 aa11.81□□□□□ -0.52
Ccdc40-202ENSMUST00000053440 Irf5P56477 497 aa11.81□□□□□ -0.52
Retrieved 100 of 22,080 RNA–protein pairs in 9.1 ms