RNA–Protein interactions for RNA: ENST00000467114.2

PRPF40A-205, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 546 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-205ENST00000467114 AEBP2Q6ZN18 517 aaPredicted RBP30.58■■■□□ 2.49
PRPF40A-205ENST00000467114 CHIC1Q5VXU3 224 aa29.29■■■□□ 2.28
PRPF40A-205ENST00000467114 SENP3Q9H4L4 574 aaPredicted RBP26.05■■□□□ 1.76
PRPF40A-205ENST00000467114 PHF23Q9BUL5 403 aaPredicted RBP25.74■■□□□ 1.71
PRPF40A-205ENST00000467114 FOXD1Q16676 465 aa24.24■■□□□ 1.47
PRPF40A-205ENST00000467114 PLPPR3Q6T4P5 718 aa23.51■■□□□ 1.35
PRPF40A-205ENST00000467114 PPP6R1Q9UPN7 881 aa22.86■■□□□ 1.25
PRPF40A-205ENST00000467114 ADRA2BP18089 450 aa22.78■■□□□ 1.24
PRPF40A-205ENST00000467114 PIAS4Q8N2W9 510 aaPredicted RBP22.7■■□□□ 1.22
PRPF40A-205ENST00000467114 MSH5O43196 834 aa22.61■■□□□ 1.21
PRPF40A-205ENST00000467114 POTEDQ86YR6 584 aa21.63■■□□□ 1.05
PRPF40A-205ENST00000467114 SCAF1Q9H7N4 1312 aaKnown RBP20.87■□□□□ 0.93
PRPF40A-205ENST00000467114 MAPK8IP2Q13387 824 aaPredicted RBP20.85■□□□□ 0.93
PRPF40A-205ENST00000467114 DMRT2Q9Y5R5 561 aa20.71■□□□□ 0.91
PRPF40A-205ENST00000467114 PPP4R3CPQ6ZMV5 832 aa20.62■□□□□ 0.89
PRPF40A-205ENST00000467114 CNKSR2Q8WXI2 1034 aa20.2■□□□□ 0.82
PRPF40A-205ENST00000467114 HOXD11P31277 338 aaPredicted RBP20.06■□□□□ 0.8
PRPF40A-205ENST00000467114 RNF216Q9NWF9 866 aaPredicted RBP19.97■□□□□ 0.79
PRPF40A-205ENST00000467114 NCBP3Q53F19 620 aaKnown RBP19.91■□□□□ 0.78
PRPF40A-205ENST00000467114 DCAF8L1A6NGE4 600 aa19.76■□□□□ 0.75
PRPF40A-205ENST00000467114 NPM3O75607 178 aaKnown RBP19.62■□□□□ 0.73
PRPF40A-205ENST00000467114 KCNA4P22459 653 aa19.45■□□□□ 0.7
PRPF40A-205ENST00000467114 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
PRPF40A-205ENST00000467114 RNF39Q9H2S5 420 aa19.32■□□□□ 0.68
PRPF40A-205ENST00000467114 CACNB1Q02641 598 aaPredicted RBP19.21■□□□□ 0.67
PRPF40A-205ENST00000467114 C1QBPQ07021 282 aaKnown RBP19.05■□□□□ 0.64
PRPF40A-205ENST00000467114 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.05■□□□□ 0.641e-10■■■□□ 15.9
PRPF40A-205ENST00000467114 U3KPZ7 1027 aaPredicted RBP18.72■□□□□ 0.59
PRPF40A-205ENST00000467114 SLC4A2P04920 1241 aa18.69■□□□□ 0.58
PRPF40A-205ENST00000467114 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
PRPF40A-205ENST00000467114 SPINK5Q9NQ38 1064 aaPredicted RBP18.35■□□□□ 0.53
PRPF40A-205ENST00000467114 CAPN15O75808 1086 aa18.28■□□□□ 0.52
PRPF40A-205ENST00000467114 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.52
PRPF40A-205ENST00000467114 HNRNPUL2Q1KMD3 747 aaKnown RBP18.27■□□□□ 0.52
PRPF40A-205ENST00000467114 APLP2Q06481 763 aa18.22■□□□□ 0.51
PRPF40A-205ENST00000467114 SAMD1Q6SPF0 538 aaPredicted RBP18.17■□□□□ 0.5
PRPF40A-205ENST00000467114 DSG3P32926 999 aa18.16■□□□□ 0.5
PRPF40A-205ENST00000467114 MYCNP04198 464 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-205ENST00000467114 FOXD4L1Q9NU39 408 aa18.09■□□□□ 0.49
PRPF40A-205ENST00000467114 ZNF219Q9P2Y4 722 aaPredicted RBP18.07■□□□□ 0.48
PRPF40A-205ENST00000467114 TRHP20396 242 aaPredicted RBP18.05■□□□□ 0.48
PRPF40A-205ENST00000467114 ZBTB22O15209 634 aa17.9■□□□□ 0.46
PRPF40A-205ENST00000467114 ABCB7O75027 752 aa17.88■□□□□ 0.45
PRPF40A-205ENST00000467114 ATF5Q9Y2D1 282 aaPredicted RBP17.7■□□□□ 0.42
PRPF40A-205ENST00000467114 POLA2Q14181 598 aa17.65■□□□□ 0.42
PRPF40A-205ENST00000467114 ATXN8OSP0DMR3 200 aa17.55■□□□□ 0.4
PRPF40A-205ENST00000467114 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
PRPF40A-205ENST00000467114 ZBTB12Q9Y330 459 aaPredicted RBP17.33■□□□□ 0.36
PRPF40A-205ENST00000467114 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
PRPF40A-205ENST00000467114 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
PRPF40A-205ENST00000467114 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
PRPF40A-205ENST00000467114 POTEHQ6S545 545 aa17■□□□□ 0.31
PRPF40A-205ENST00000467114 FBLN2P98095 1184 aa16.99■□□□□ 0.31
PRPF40A-205ENST00000467114 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
PRPF40A-205ENST00000467114 MKRN4PQ13434 485 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-205ENST00000467114 CHRDL2Q6WN34 429 aa16.84■□□□□ 0.29
PRPF40A-205ENST00000467114 SPDYE2BA6NHP3 402 aa16.81■□□□□ 0.28
PRPF40A-205ENST00000467114 SPDYE6P0CI01 402 aa16.81■□□□□ 0.28
PRPF40A-205ENST00000467114 SPDYE2Q495Y8 402 aa16.81■□□□□ 0.28
PRPF40A-205ENST00000467114 REM2Q8IYK8 340 aaPredicted RBP16.81■□□□□ 0.28
PRPF40A-205ENST00000467114 ZNF692Q9BU19 519 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-205ENST00000467114 SSUH2Q9Y2M2 353 aa16.63■□□□□ 0.25
PRPF40A-205ENST00000467114 PITPNM1O00562 1244 aa16.62■□□□□ 0.25
PRPF40A-205ENST00000467114 PIP4P2Q8N4L2 257 aa16.49■□□□□ 0.23
PRPF40A-205ENST00000467114 FXR2P51116 673 aaKnown RBP eCLIP16.46■□□□□ 0.23
PRPF40A-205ENST00000467114 SPDYE1Q8NFV5 336 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-205ENST00000467114 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
PRPF40A-205ENST00000467114 CLEC11AQ9Y240 323 aa16.36■□□□□ 0.21
PRPF40A-205ENST00000467114 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
PRPF40A-205ENST00000467114 PRKAR2AP13861 404 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-205ENST00000467114 PRR29P0C7W0 189 aa16.16■□□□□ 0.18
PRPF40A-205ENST00000467114 HAX1O00165 279 aa16.1■□□□□ 0.17
PRPF40A-205ENST00000467114 SP7Q8TDD2 431 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-205ENST00000467114 CHADLQ6NUI6 762 aa16.04■□□□□ 0.16
PRPF40A-205ENST00000467114 STAG3Q9UJ98 1225 aa16.02■□□□□ 0.16
PRPF40A-205ENST00000467114 EVX2Q03828 476 aa15.94■□□□□ 0.14
PRPF40A-205ENST00000467114 C19orf67A6NJJ6 358 aa15.92■□□□□ 0.14
PRPF40A-205ENST00000467114 PROM2Q8N271 834 aa15.92■□□□□ 0.14
PRPF40A-205ENST00000467114 FARP1Q9Y4F1 1045 aaPredicted RBP15.86■□□□□ 0.13
PRPF40A-205ENST00000467114 CREBZFQ9NS37 354 aa15.84■□□□□ 0.13
PRPF40A-205ENST00000467114 CD44P16070 742 aaKnown RBP15.68■□□□□ 0.1
PRPF40A-205ENST00000467114 FKBP8Q14318 412 aa15.64■□□□□ 0.09
PRPF40A-205ENST00000467114 MNX1P50219 401 aaPredicted RBP15.62■□□□□ 0.09
PRPF40A-205ENST00000467114 GABBR2O75899 941 aa15.61■□□□□ 0.09
PRPF40A-205ENST00000467114 NPM1P06748 294 aaKnown RBP eCLIP15.55■□□□□ 0.08
PRPF40A-205ENST00000467114 CLCN6P51797 869 aa15.5■□□□□ 0.07
PRPF40A-205ENST00000467114 ZRANB1Q9UGI0 708 aa15.5■□□□□ 0.07
PRPF40A-205ENST00000467114 ZNF579Q8NAF0 562 aaKnown RBP15.49■□□□□ 0.07
PRPF40A-205ENST00000467114 MIER1Q8N108 512 aa15.44■□□□□ 0.06
PRPF40A-205ENST00000467114 PAK3O75914 559 aaPredicted RBP15.43■□□□□ 0.06
PRPF40A-205ENST00000467114 PLEKHG5O94827 1062 aa15.4■□□□□ 0.06
PRPF40A-205ENST00000467114 PLCD3Q8N3E9 789 aa15.33■□□□□ 0.04
PRPF40A-205ENST00000467114 PHF12Q96QT6 1004 aa15.3■□□□□ 0.04
PRPF40A-205ENST00000467114 POTEIP0CG38 1075 aa15.29■□□□□ 0.04
PRPF40A-205ENST00000467114 FBXO3Q9UK99 471 aa15.28■□□□□ 0.04
PRPF40A-205ENST00000467114 GALR2O43603 387 aaPredicted RBP15.25■□□□□ 0.03
PRPF40A-205ENST00000467114 TSPYL2Q9H2G4 693 aaPredicted RBP15.24■□□□□ 0.03
PRPF40A-205ENST00000467114 ZBTB47Q9UFB7 747 aaPredicted RBP15.24■□□□□ 0.03
PRPF40A-205ENST00000467114 DCBLD2Q96PD2 775 aa15.21■□□□□ 0.03
PRPF40A-205ENST00000467114 CCDC61Q9Y6R9 512 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms