Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 AC073195.1-201ENST00000607241 877 ntBASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.97■□□□□ 0.31
HIF3AQ9Y2N7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 AC011298.2-201ENST00000617989 482 ntBASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 AL359736.2-201ENST00000621992 437 ntBASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 CR392000.1-201ENST00000624770 1228 ntBASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 KRT8P32-201ENST00000512863 1461 ntBASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HIF3AQ9Y2N7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HIF3AQ9Y2N7 MTMR9LP-203ENST00000426597 1545 ntBASIC16.96■□□□□ 0.3
HIF3AQ9Y2N7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.96■□□□□ 0.3
HIF3AQ9Y2N7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.96■□□□□ 0.3
HIF3AQ9Y2N7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.95■□□□□ 0.3
HIF3AQ9Y2N7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 FAM201B-201ENST00000458407 597 ntBASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 CKBP1-201ENST00000565489 1086 ntBASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 AC130371.2-201ENST00000619443 611 ntBASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 ITM2C-210ENST00000620962 501 ntBASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms