Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 RPS2P55-201ENST00000397318 883 ntBASIC15.21■□□□□ 0.03
FOXA2Q9Y261 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 KSR1P1-201ENST00000446298 240 ntBASIC15.21■□□□□ 0.03
FOXA2Q9Y261 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC107956.1-201ENST00000494359 873 ntBASIC15.21■□□□□ 0.03
FOXA2Q9Y261 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC073195.1-201ENST00000607241 877 ntBASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA2Q9Y261 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA2Q9Y261 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA2Q9Y261 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 AC090340.1-201ENST00000620778 4980 ntBASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 AL354751.1-201ENST00000412768 1863 ntBASIC15.2■□□□□ 0.02
FOXA2Q9Y261 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA2Q9Y261 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AC233702.5-201ENST00000584107 538 ntBASIC15.19■□□□□ 0.02
FOXA2Q9Y261 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms