Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX2Q9NPC8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AC097488.1-201ENST00000507834 756 ntBASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AC026471.5-201ENST00000615068 467 ntBASIC20.18■□□□□ 0.82
SIX2Q9NPC8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AL109659.2-201ENST00000606809 1674 ntBASIC20.18■□□□□ 0.82
SIX2Q9NPC8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.18■□□□□ 0.82
SIX2Q9NPC8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 AL390961.4-201ENST00000623958 2535 ntBASIC20.17■□□□□ 0.82
SIX2Q9NPC8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 GPAT2P1-201ENST00000444924 1672 ntBASIC20.17■□□□□ 0.82
SIX2Q9NPC8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 AL023284.2-201ENST00000405850 579 ntBASIC20.17■□□□□ 0.82
SIX2Q9NPC8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 AP001412.1-201ENST00000608405 714 ntBASIC20.17■□□□□ 0.82
SIX2Q9NPC8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SIX2Q9NPC8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AC008550.1-201ENST00000511500 884 ntBASIC20.16■□□□□ 0.82
SIX2Q9NPC8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX2Q9NPC8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 MIR4674-201ENST00000582457 87 ntBASIC20.15■□□□□ 0.82
SIX2Q9NPC8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX2Q9NPC8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms