Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 IRX1P1-201ENST00000438849 1838 ntBASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 AC104417.2-201ENST00000562989 1793 ntBASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 BICD1-207ENST00000551848 1962 ntBASIC16.17■□□□□ 0.18
CHMP1AQ9HD42 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 AL354751.1-201ENST00000412768 1863 ntBASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 AC097658.1-201ENST00000475555 843 ntBASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 MIR4758-201ENST00000577688 71 ntBASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.16■□□□□ 0.18
CHMP1AQ9HD42 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 AC068880.1-201ENST00000507289 2297 ntBASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHMP1AQ9HD42 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms