Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
CCDC113Q9H0I3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC113Q9H0I3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 KRT8P3-201ENST00000519669 1449 ntBASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC113Q9H0I3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 AC005332.7-201ENST00000614046 2005 ntBASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 FP475955.4-201ENST00000623131 1990 ntBASIC20.77■□□□□ 0.92
CCDC113Q9H0I3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC113Q9H0I3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CCDC113Q9H0I3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 AC006011.2-201ENST00000621313 1158 ntBASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms