Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC26.27■■□□□ 1.8
USP47Q96K76 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC26.27■■□□□ 1.8
USP47Q96K76 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC26.27■■□□□ 1.8
USP47Q96K76 AL499627.1-201ENST00000569373 2188 ntBASIC26.27■■□□□ 1.8
USP47Q96K76 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP47Q96K76 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.8
USP47Q96K76 AC034236.2-201ENST00000606662 1610 ntBASIC26.26■■□□□ 1.8
USP47Q96K76 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC26.26■■□□□ 1.79
USP47Q96K76 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 CD81-212ENST00000526072 1172 ntTSL 5 BASIC26.26■■□□□ 1.79
USP47Q96K76 ETFA-216ENST00000560726 942 ntTSL 3 BASIC26.26■■□□□ 1.79
USP47Q96K76 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC26.26■■□□□ 1.79
USP47Q96K76 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
USP47Q96K76 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP47Q96K76 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC26.26■■□□□ 1.79
USP47Q96K76 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
USP47Q96K76 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
USP47Q96K76 AP000523.1-201ENST00000398242 1049 ntBASIC26.25■■□□□ 1.79
USP47Q96K76 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC26.25■■□□□ 1.79
USP47Q96K76 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC26.25■■□□□ 1.79
USP47Q96K76 GCSHP2-201ENST00000560971 527 ntBASIC26.25■■□□□ 1.79
USP47Q96K76 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC26.25■■□□□ 1.79
USP47Q96K76 AC011558.1-201ENST00000623459 338 ntBASIC26.25■■□□□ 1.79
USP47Q96K76 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC26.25■■□□□ 1.79
USP47Q96K76 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP47Q96K76 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
USP47Q96K76 AC087289.5-201ENST00000586076 3175 ntBASIC26.24■■□□□ 1.79
USP47Q96K76 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
USP47Q96K76 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC26.24■■□□□ 1.79
USP47Q96K76 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC26.24■■□□□ 1.79
USP47Q96K76 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 AC093503.3-201ENST00000624917 2352 ntBASIC26.24■■□□□ 1.79
USP47Q96K76 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC26.24■■□□□ 1.79
USP47Q96K76 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP47Q96K76 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
USP47Q96K76 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC26.23■■□□□ 1.79
USP47Q96K76 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 KRT8P50-201ENST00000562022 1438 ntBASIC26.23■■□□□ 1.79
USP47Q96K76 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC26.23■■□□□ 1.79
USP47Q96K76 AK4P3-201ENST00000418260 669 ntBASIC26.23■■□□□ 1.79
USP47Q96K76 KRT18P23-201ENST00000435622 1283 ntBASIC26.23■■□□□ 1.79
USP47Q96K76 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC26.23■■□□□ 1.79
USP47Q96K76 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC26.23■■□□□ 1.79
USP47Q96K76 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 LTBR-211ENST00000543190 785 ntTSL 3 BASIC26.23■■□□□ 1.79
USP47Q96K76 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC26.23■■□□□ 1.79
USP47Q96K76 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC26.23■■□□□ 1.79
USP47Q96K76 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC26.23■■□□□ 1.79
USP47Q96K76 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP47Q96K76 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
USP47Q96K76 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP47Q96K76 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP47Q96K76 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP47Q96K76 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP47Q96K76 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP47Q96K76 SPDYE15P-201ENST00000424157 909 ntBASIC26.22■■□□□ 1.79
USP47Q96K76 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC26.22■■□□□ 1.79
USP47Q96K76 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC26.22■■□□□ 1.79
USP47Q96K76 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.22■■□□□ 1.79
USP47Q96K76 AC022616.7-201ENST00000525383 220 ntBASIC26.22■■□□□ 1.79
USP47Q96K76 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC26.22■■□□□ 1.79
USP47Q96K76 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.22■■□□□ 1.79
USP47Q96K76 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.22■■□□□ 1.79
USP47Q96K76 RMI2-205ENST00000576027 818 ntTSL 2 BASIC26.22■■□□□ 1.79
USP47Q96K76 NAT14-202ENST00000587400 416 ntTSL 5 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms