Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC026471.1-201ENST00000564629 3026 ntBASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 RN7SL471P-201ENST00000580476 299 ntBASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 MIR4651-201ENST00000582622 73 ntBASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AC110285.5-201ENST00000611501 352 ntBASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLHC1Q8NHS4 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 KRT8P11-201ENST00000409686 1436 ntBASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.03■□□□□ 0.48
CLHC1Q8NHS4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms