Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.61■□□□□ 0.41
CLIP4Q8N3C7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 AC239809.2-201ENST00000415381 517 ntBASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLIP4Q8N3C7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 RN7SL471P-201ENST00000580476 299 ntBASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 AC124016.1-201ENST00000609552 612 ntBASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLIP4Q8N3C7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 AL390961.4-201ENST00000623958 2535 ntBASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
CLIP4Q8N3C7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 KRT16P5-201ENST00000455284 522 ntBASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 AC006058.3-201ENST00000606217 1069 ntBASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 AC073648.6-201ENST00000641589 218 ntBASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP4Q8N3C7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms