Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.91■□□□□ 0.14
USF1P22415 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.91■□□□□ 0.14
USF1P22415 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
USF1P22415 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.91■□□□□ 0.14
USF1P22415 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 KRT18P48-201ENST00000434763 852 ntBASIC15.91■□□□□ 0.14
USF1P22415 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.91■□□□□ 0.14
USF1P22415 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.91■□□□□ 0.14
USF1P22415 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.91■□□□□ 0.14
USF1P22415 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.91■□□□□ 0.14
USF1P22415 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.91■□□□□ 0.14
USF1P22415 VENTXP5-201ENST00000523979 775 ntBASIC15.91■□□□□ 0.14
USF1P22415 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.91■□□□□ 0.14
USF1P22415 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.91■□□□□ 0.14
USF1P22415 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
USF1P22415 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
USF1P22415 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.91■□□□□ 0.14
USF1P22415 AC005332.1-201ENST00000577698 1310 ntBASIC15.91■□□□□ 0.14
USF1P22415 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
USF1P22415 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.9■□□□□ 0.14
USF1P22415 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.9■□□□□ 0.14
USF1P22415 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.9■□□□□ 0.14
USF1P22415 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.9■□□□□ 0.14
USF1P22415 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.9■□□□□ 0.14
USF1P22415 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
USF1P22415 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.9■□□□□ 0.14
USF1P22415 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.9■□□□□ 0.14
USF1P22415 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.9■□□□□ 0.14
USF1P22415 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15.9■□□□□ 0.14
USF1P22415 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.9■□□□□ 0.14
USF1P22415 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
USF1P22415 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.9■□□□□ 0.14
USF1P22415 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
USF1P22415 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.89■□□□□ 0.13
USF1P22415 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
USF1P22415 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.89■□□□□ 0.13
USF1P22415 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.89■□□□□ 0.13
USF1P22415 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 KRT18P38-201ENST00000449496 1282 ntBASIC15.89■□□□□ 0.13
USF1P22415 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
USF1P22415 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.89■□□□□ 0.13
USF1P22415 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.89■□□□□ 0.13
USF1P22415 AC069148.1-201ENST00000608741 768 ntBASIC15.89■□□□□ 0.13
USF1P22415 AC116407.4-201ENST00000623319 1061 ntBASIC15.89■□□□□ 0.13
USF1P22415 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.89■□□□□ 0.13
USF1P22415 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
USF1P22415 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
USF1P22415 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
USF1P22415 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
USF1P22415 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
USF1P22415 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
USF1P22415 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
USF1P22415 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.88■□□□□ 0.13
USF1P22415 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
USF1P22415 TREX1-205ENST00000625293 1783 ntBASIC15.88■□□□□ 0.13
USF1P22415 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
USF1P22415 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.88■□□□□ 0.13
USF1P22415 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.88■□□□□ 0.13
USF1P22415 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
USF1P22415 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.88■□□□□ 0.13
USF1P22415 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
USF1P22415 AC112907.2-201ENST00000448639 330 ntBASIC15.88■□□□□ 0.13
USF1P22415 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.88■□□□□ 0.13
USF1P22415 AL136038.3-201ENST00000561909 1096 ntBASIC15.88■□□□□ 0.13
USF1P22415 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.88■□□□□ 0.13
USF1P22415 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms