Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TOP3BO95985 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.25■□□□□ 0.67
TOP3BO95985 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TOP3BO95985 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.25■□□□□ 0.67
TOP3BO95985 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TOP3BO95985 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.24■□□□□ 0.67
TOP3BO95985 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.24■□□□□ 0.67
TOP3BO95985 AP000550.4-202ENST00000639755 178 ntBASIC19.24■□□□□ 0.67
TOP3BO95985 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.24■□□□□ 0.67
TOP3BO95985 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
TOP3BO95985 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 KRT16P1-201ENST00000399124 1418 ntBASIC19.24■□□□□ 0.67
TOP3BO95985 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
TOP3BO95985 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
TOP3BO95985 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TOP3BO95985 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TOP3BO95985 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.23■□□□□ 0.67
TOP3BO95985 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TOP3BO95985 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.23■□□□□ 0.67
TOP3BO95985 NIFKP9-201ENST00000419265 221 ntBASIC19.23■□□□□ 0.67
TOP3BO95985 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.23■□□□□ 0.67
TOP3BO95985 KSR1P1-201ENST00000446298 240 ntBASIC19.23■□□□□ 0.67
TOP3BO95985 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 AC091390.4-202ENST00000476426 537 ntBASIC19.23■□□□□ 0.67
TOP3BO95985 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.23■□□□□ 0.67
TOP3BO95985 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.23■□□□□ 0.67
TOP3BO95985 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.23■□□□□ 0.67
TOP3BO95985 AC139887.4-201ENST00000607877 719 ntBASIC19.23■□□□□ 0.67
TOP3BO95985 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TOP3BO95985 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TOP3BO95985 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
TOP3BO95985 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TOP3BO95985 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.22■□□□□ 0.67
TOP3BO95985 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.22■□□□□ 0.67
TOP3BO95985 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TOP3BO95985 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.22■□□□□ 0.67
TOP3BO95985 LINC01238-205ENST00000567549 1107 ntBASIC19.22■□□□□ 0.67
TOP3BO95985 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.22■□□□□ 0.67
TOP3BO95985 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TOP3BO95985 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.22■□□□□ 0.67
TOP3BO95985 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.22■□□□□ 0.67
TOP3BO95985 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.22■□□□□ 0.67
TOP3BO95985 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.22■□□□□ 0.67
TOP3BO95985 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TOP3BO95985 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.21■□□□□ 0.67
TOP3BO95985 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.21■□□□□ 0.67
TOP3BO95985 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.21■□□□□ 0.67
TOP3BO95985 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.21■□□□□ 0.67
TOP3BO95985 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.21■□□□□ 0.67
TOP3BO95985 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 FAM8A6P-201ENST00000407496 1135 ntBASIC19.21■□□□□ 0.67
TOP3BO95985 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TOP3BO95985 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms