Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 CKBP1-201ENST00000565489 1086 ntBASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 MIR6786-201ENST00000616843 113 ntBASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM49BA6NDI0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 FAM207BP-201ENST00000447172 505 ntBASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 AIRN-201ENST00000601203 4374 ntBASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM49BA6NDI0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AC142381.4-202ENST00000563973 229 ntBASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 AL354751.1-201ENST00000412768 1863 ntBASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM49BA6NDI0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRIM49BA6NDI0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM49BA6NDI0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms