Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 BX276092.5-203ENST00000456199 560 ntBASIC22.21■■□□□ 1.15
DDX4Q9NQI0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX4Q9NQI0 AC093484.2-201ENST00000580996 2166 ntBASIC22.21■■□□□ 1.15
DDX4Q9NQI0 AL032819.2-201ENST00000624543 2162 ntBASIC22.21■■□□□ 1.15
DDX4Q9NQI0 AC093525.10-201ENST00000625130 1569 ntBASIC22.21■■□□□ 1.15
DDX4Q9NQI0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.15
DDX4Q9NQI0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.15
DDX4Q9NQI0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 AC092329.2-201ENST00000598402 547 ntBASIC22.2■■□□□ 1.14
DDX4Q9NQI0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 AC068587.9-201ENST00000641814 219 ntBASIC22.2■■□□□ 1.14
DDX4Q9NQI0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX4Q9NQI0 AC006333.2-201ENST00000607957 2099 ntBASIC22.19■■□□□ 1.14
DDX4Q9NQI0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 KRT8P7-201ENST00000533003 1432 ntBASIC22.19■■□□□ 1.14
DDX4Q9NQI0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
DDX4Q9NQI0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 KRT8P26-201ENST00000534154 1276 ntBASIC22.18■■□□□ 1.14
DDX4Q9NQI0 AP002414.4-201ENST00000589764 1148 ntBASIC22.18■■□□□ 1.14
DDX4Q9NQI0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX4Q9NQI0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 AC073130.3-201ENST00000624389 2278 ntBASIC22.17■■□□□ 1.14
DDX4Q9NQI0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX4Q9NQI0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms